Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2125 and GFF2126 overlap by 1 nucleotides GFF2126 and GFF2127 are separated by 109 nucleotides GFF2127 and GFF2128 are separated by 14 nucleotides GFF2128 and GFF2129 are separated by 198 nucleotides GFF2129 and GFF2130 are separated by 154 nucleotides
GFF2125 - hypothetical protein, at 812,466 to 813,557
GFF2125
GFF2126 - hypothetical protein, at 813,557 to 813,760
GFF2126
GFF2127 - hypothetical protein, at 813,870 to 814,118
GFF2127
GFF2128 - hypothetical protein, at 814,133 to 814,417
GFF2128
GFF2129 - hypothetical protein, at 814,616 to 814,849
GFF2129
GFF2130 - hypothetical protein, at 815,004 to 817,079
GFF2130
Position (kb) 813
814
815 Strain fitness (log2 ratio) -2
-1
0
1 at 812.981 kb on + strand, within GFF2125 at 813.085 kb on + strand, within GFF2125 at 813.086 kb on - strand, within GFF2125 at 813.086 kb on - strand, within GFF2125 at 813.086 kb on - strand, within GFF2125 at 813.250 kb on + strand, within GFF2125 at 813.250 kb on + strand, within GFF2125 at 813.251 kb on - strand, within GFF2125 at 813.251 kb on - strand, within GFF2125 at 813.343 kb on + strand, within GFF2125 at 813.367 kb on + strand, within GFF2125 at 813.480 kb on + strand at 813.732 kb on + strand, within GFF2126 at 813.733 kb on - strand, within GFF2126 at 813.733 kb on - strand, within GFF2126 at 813.799 kb on + strand at 813.902 kb on - strand, within GFF2127 at 813.902 kb on - strand, within GFF2127 at 813.902 kb on - strand, within GFF2127 at 813.902 kb on - strand, within GFF2127 at 814.101 kb on - strand at 814.150 kb on - strand at 814.188 kb on + strand, within GFF2128 at 814.189 kb on - strand, within GFF2128 at 814.368 kb on + strand, within GFF2128 at 814.368 kb on + strand, within GFF2128 at 814.369 kb on - strand, within GFF2128 at 814.369 kb on - strand, within GFF2128 at 814.369 kb on - strand, within GFF2128 at 814.443 kb on + strand at 814.444 kb on - strand at 814.527 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.616 kb on - strand at 814.920 kb on + strand at 814.920 kb on + strand at 814.921 kb on - strand at 814.925 kb on + strand at 814.926 kb on - strand at 814.926 kb on - strand at 814.926 kb on - strand at 814.929 kb on + strand at 814.929 kb on + strand at 814.960 kb on - strand at 814.960 kb on - strand at 814.994 kb on + strand at 814.994 kb on + strand at 814.995 kb on - strand at 814.995 kb on - strand at 815.055 kb on - strand at 815.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 812,981 + GFF2125 0.47 -0.5 813,085 + GFF2125 0.57 +0.5 813,086 - GFF2125 0.57 +0.2 813,086 - GFF2125 0.57 -0.2 813,086 - GFF2125 0.57 -0.9 813,250 + GFF2125 0.72 -0.6 813,250 + GFF2125 0.72 +0.3 813,251 - GFF2125 0.72 +0.8 813,251 - GFF2125 0.72 +0.1 813,343 + GFF2125 0.80 -0.2 813,367 + GFF2125 0.83 -0.7 813,480 + +0.0 813,732 + GFF2126 0.86 -0.7 813,733 - GFF2126 0.86 +0.2 813,733 - GFF2126 0.86 -0.4 813,799 + -0.2 813,902 - GFF2127 0.13 -0.8 813,902 - GFF2127 0.13 +0.4 813,902 - GFF2127 0.13 -0.7 813,902 - GFF2127 0.13 +0.5 814,101 - -1.2 814,150 - -0.0 814,188 + GFF2128 0.19 +0.5 814,189 - GFF2128 0.20 +0.2 814,368 + GFF2128 0.82 -1.0 814,368 + GFF2128 0.82 +0.1 814,369 - GFF2128 0.83 -1.2 814,369 - GFF2128 0.83 -0.8 814,369 - GFF2128 0.83 -1.3 814,443 + -0.4 814,444 - -1.5 814,527 + +0.2 814,615 + -1.3 814,615 + +0.6 814,615 + -0.1 814,615 + -0.3 814,615 + -0.2 814,615 + +0.2 814,616 - -1.2 814,920 + -0.3 814,920 + -1.4 814,921 - -1.3 814,925 + +0.3 814,926 - +0.4 814,926 - -0.1 814,926 - +0.1 814,929 + -1.8 814,929 + -0.2 814,960 - +0.4 814,960 - -1.3 814,994 + +0.3 814,994 + -0.1 814,995 - -0.7 814,995 - -0.3 815,055 - -0.1 815,055 - +0.1
Or see this region's nucleotide sequence