Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2115 and GFF2116 are separated by 168 nucleotides GFF2116 and GFF2117 are separated by 68 nucleotides GFF2117 and GFF2118 are separated by 226 nucleotides GFF2118 and GFF2119 are separated by 111 nucleotides
GFF2115 - hypothetical protein, at 801,636 to 802,607
GFF2115
GFF2116 - hypothetical protein, at 802,776 to 803,018
GFF2116
GFF2117 - hypothetical protein, at 803,087 to 803,236
GFF2117
GFF2118 - hypothetical protein, at 803,463 to 803,672
GFF2118
GFF2119 - hypothetical protein, at 803,784 to 804,500
GFF2119
Position (kb) 803
804 Strain fitness (log2 ratio) -2
-1
0
1 at 802.514 kb on - strand at 802.514 kb on - strand at 802.534 kb on + strand at 802.535 kb on - strand at 802.590 kb on + strand at 802.590 kb on + strand at 802.590 kb on + strand at 802.591 kb on - strand at 802.591 kb on - strand at 802.591 kb on - strand at 802.591 kb on - strand at 802.591 kb on - strand at 802.592 kb on + strand at 802.592 kb on + strand at 802.592 kb on + strand at 802.592 kb on + strand at 802.593 kb on - strand at 802.593 kb on - strand at 802.593 kb on - strand at 802.593 kb on - strand at 802.593 kb on - strand at 802.625 kb on + strand at 802.627 kb on - strand at 802.684 kb on - strand at 802.685 kb on + strand at 802.685 kb on + strand at 802.685 kb on + strand at 802.685 kb on + strand at 802.709 kb on + strand at 802.709 kb on + strand at 802.715 kb on + strand at 802.715 kb on + strand at 802.715 kb on + strand at 802.716 kb on - strand at 802.747 kb on + strand at 802.747 kb on + strand at 802.748 kb on - strand at 802.748 kb on - strand at 802.777 kb on + strand at 802.892 kb on + strand, within GFF2116 at 802.892 kb on + strand, within GFF2116 at 802.893 kb on - strand, within GFF2116 at 802.893 kb on - strand, within GFF2116 at 802.893 kb on - strand, within GFF2116 at 802.893 kb on - strand, within GFF2116 at 803.050 kb on - strand at 803.239 kb on - strand at 803.239 kb on - strand at 803.239 kb on - strand at 803.285 kb on + strand at 803.286 kb on - strand at 803.338 kb on - strand at 803.542 kb on + strand, within GFF2118 at 803.542 kb on + strand, within GFF2118 at 803.543 kb on - strand, within GFF2118 at 803.739 kb on + strand at 803.739 kb on + strand at 803.739 kb on + strand at 803.796 kb on + strand at 803.796 kb on + strand at 803.797 kb on - strand at 803.895 kb on + strand, within GFF2119 at 803.981 kb on + strand, within GFF2119 at 803.982 kb on - strand, within GFF2119 at 803.982 kb on - strand, within GFF2119 at 804.145 kb on + strand, within GFF2119 at 804.145 kb on + strand, within GFF2119 at 804.146 kb on - strand, within GFF2119 at 804.146 kb on - strand, within GFF2119 at 804.174 kb on - strand, within GFF2119 at 804.498 kb on + strand at 804.498 kb on + strand at 804.556 kb on + strand at 804.556 kb on + strand at 804.556 kb on + strand at 804.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 802,514 - -0.6 802,514 - -0.1 802,534 + -0.6 802,535 - -0.5 802,590 + +1.1 802,590 + +0.5 802,590 + +0.3 802,591 - -0.5 802,591 - +0.1 802,591 - -0.7 802,591 - +1.0 802,591 - -0.1 802,592 + -1.2 802,592 + -0.1 802,592 + -0.8 802,592 + -0.4 802,593 - +0.1 802,593 - -0.4 802,593 - +0.3 802,593 - +0.5 802,593 - +0.1 802,625 + +0.5 802,627 - -0.2 802,684 - -0.2 802,685 + +0.6 802,685 + +0.3 802,685 + -0.3 802,685 + -0.7 802,709 + -0.4 802,709 + +0.6 802,715 + -1.7 802,715 + +1.0 802,715 + -0.1 802,716 - -0.2 802,747 + -0.5 802,747 + -0.0 802,748 - +0.8 802,748 - +0.4 802,777 + +0.1 802,892 + GFF2116 0.48 +0.1 802,892 + GFF2116 0.48 -0.3 802,893 - GFF2116 0.48 +0.4 802,893 - GFF2116 0.48 +0.1 802,893 - GFF2116 0.48 -2.0 802,893 - GFF2116 0.48 +0.3 803,050 - +1.2 803,239 - -0.9 803,239 - +0.0 803,239 - +1.5 803,285 + -0.3 803,286 - +0.9 803,338 - +0.3 803,542 + GFF2118 0.38 -0.6 803,542 + GFF2118 0.38 -1.8 803,543 - GFF2118 0.38 +0.3 803,739 + -0.0 803,739 + +0.5 803,739 + -0.5 803,796 + -1.5 803,796 + -0.0 803,797 - -1.5 803,895 + GFF2119 0.15 -1.1 803,981 + GFF2119 0.27 +0.1 803,982 - GFF2119 0.28 +0.6 803,982 - GFF2119 0.28 -0.5 804,145 + GFF2119 0.50 -0.3 804,145 + GFF2119 0.50 +0.3 804,146 - GFF2119 0.50 +0.4 804,146 - GFF2119 0.50 +1.0 804,174 - GFF2119 0.54 +0.5 804,498 + +0.4 804,498 + +0.3 804,556 + -0.0 804,556 + -0.2 804,556 + +0.6 804,557 - +0.2
Or see this region's nucleotide sequence