Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF210 and GFF211 overlap by 1 nucleotides GFF211 and GFF212 are separated by 272 nucleotides
GFF210 - hypothetical protein, at 221,396 to 222,958
GFF210
GFF211 - NADH-quinone oxidoreductase subunit E, at 222,958 to 223,452
GFF211
GFF212 - Hydrogen peroxide-inducible genes activator, at 223,725 to 224,654
GFF212
Position (kb) 222
223
224 Strain fitness (log2 ratio) -2
-1
0
1 at 221.980 kb on - strand, within GFF210 at 222.153 kb on + strand, within GFF210 at 222.294 kb on + strand, within GFF210 at 222.294 kb on + strand, within GFF210 at 222.294 kb on + strand, within GFF210 at 222.357 kb on + strand, within GFF210 at 222.357 kb on + strand, within GFF210 at 222.429 kb on + strand, within GFF210 at 222.429 kb on + strand, within GFF210 at 222.429 kb on + strand, within GFF210 at 222.430 kb on - strand, within GFF210 at 222.430 kb on - strand, within GFF210 at 222.595 kb on - strand, within GFF210 at 222.595 kb on - strand, within GFF210 at 223.088 kb on + strand, within GFF211 at 223.257 kb on - strand, within GFF211 at 223.275 kb on - strand, within GFF211 at 223.275 kb on - strand, within GFF211 at 223.442 kb on + strand at 223.443 kb on - strand at 223.443 kb on - strand at 224.135 kb on - strand, within GFF212 at 224.135 kb on - strand, within GFF212 at 224.135 kb on - strand, within GFF212 at 224.176 kb on + strand, within GFF212 at 224.222 kb on - strand, within GFF212 at 224.222 kb on - strand, within GFF212 at 224.225 kb on + strand, within GFF212 at 224.225 kb on + strand, within GFF212 at 224.225 kb on + strand, within GFF212 at 224.225 kb on + strand, within GFF212 at 224.226 kb on - strand, within GFF212 at 224.289 kb on + strand, within GFF212
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 221,980 - GFF210 0.37 +0.1 222,153 + GFF210 0.48 +0.3 222,294 + GFF210 0.57 -0.4 222,294 + GFF210 0.57 -0.7 222,294 + GFF210 0.57 +0.3 222,357 + GFF210 0.61 +0.3 222,357 + GFF210 0.61 -0.2 222,429 + GFF210 0.66 -0.4 222,429 + GFF210 0.66 -0.3 222,429 + GFF210 0.66 -0.3 222,430 - GFF210 0.66 +0.2 222,430 - GFF210 0.66 +0.4 222,595 - GFF210 0.77 -0.4 222,595 - GFF210 0.77 +0.8 223,088 + GFF211 0.26 -0.8 223,257 - GFF211 0.60 -0.4 223,275 - GFF211 0.64 -1.0 223,275 - GFF211 0.64 +0.7 223,442 + -2.1 223,443 - -0.2 223,443 - -0.2 224,135 - GFF212 0.44 +0.9 224,135 - GFF212 0.44 -0.4 224,135 - GFF212 0.44 -0.0 224,176 + GFF212 0.48 +0.1 224,222 - GFF212 0.53 -0.2 224,222 - GFF212 0.53 -0.0 224,225 + GFF212 0.54 -0.5 224,225 + GFF212 0.54 -0.7 224,225 + GFF212 0.54 -0.5 224,225 + GFF212 0.54 +0.8 224,226 - GFF212 0.54 -0.2 224,289 + GFF212 0.61 -1.0
Or see this region's nucleotide sequence