Strain Fitness in Xanthobacter sp. DMC5 around GFF209

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF207 and GFF208 overlap by 11 nucleotidesGFF208 and GFF209 are separated by 60 nucleotidesGFF209 and GFF210 are separated by 18 nucleotides GFF207 - hypothetical protein, at 217,390 to 217,620 GFF207 GFF208 - Sulfur carrier protein FdhD, at 217,610 to 218,485 GFF208 GFF209 - Putative formate dehydrogenase, at 218,546 to 221,377 GFF209 GFF210 - hypothetical protein, at 221,396 to 222,958 GFF210 Position (kb) 218 219 220 221 222Strain fitness (log2 ratio) -2 -1 0 1at 217.587 kb on + strand, within GFF207at 217.587 kb on + strand, within GFF207at 217.587 kb on + strand, within GFF207at 217.589 kb on + strand, within GFF207at 217.589 kb on + strand, within GFF207at 217.589 kb on + strand, within GFF207at 217.590 kb on - strand, within GFF207at 217.590 kb on - strand, within GFF207at 217.590 kb on - strand, within GFF207at 217.611 kb on + strandat 217.612 kb on - strandat 218.589 kb on + strandat 218.590 kb on - strandat 218.650 kb on - strandat 218.679 kb on + strandat 218.680 kb on - strandat 218.730 kb on + strandat 218.731 kb on - strandat 218.731 kb on - strandat 218.731 kb on - strandat 218.944 kb on + strand, within GFF209at 218.945 kb on - strand, within GFF209at 218.991 kb on + strand, within GFF209at 219.114 kb on + strand, within GFF209at 219.114 kb on + strand, within GFF209at 219.180 kb on + strand, within GFF209at 219.180 kb on + strand, within GFF209at 219.348 kb on + strand, within GFF209at 219.348 kb on + strand, within GFF209at 219.348 kb on + strand, within GFF209at 219.349 kb on - strand, within GFF209at 219.465 kb on + strand, within GFF209at 219.465 kb on + strand, within GFF209at 219.466 kb on - strand, within GFF209at 219.466 kb on - strand, within GFF209at 219.466 kb on - strand, within GFF209at 219.466 kb on - strand, within GFF209at 219.466 kb on - strand, within GFF209at 219.466 kb on - strand, within GFF209at 219.477 kb on + strand, within GFF209at 219.477 kb on + strand, within GFF209at 219.478 kb on - strand, within GFF209at 219.478 kb on - strand, within GFF209at 219.478 kb on - strand, within GFF209at 219.478 kb on - strand, within GFF209at 219.478 kb on - strand, within GFF209at 219.777 kb on + strand, within GFF209at 219.777 kb on + strand, within GFF209at 219.777 kb on + strand, within GFF209at 219.778 kb on - strand, within GFF209at 219.778 kb on - strand, within GFF209at 219.804 kb on + strand, within GFF209at 219.804 kb on + strand, within GFF209at 219.805 kb on - strand, within GFF209at 219.849 kb on + strand, within GFF209at 219.849 kb on + strand, within GFF209at 219.850 kb on - strand, within GFF209at 220.030 kb on - strand, within GFF209at 220.227 kb on + strand, within GFF209at 220.227 kb on + strand, within GFF209at 220.228 kb on - strand, within GFF209at 220.228 kb on - strand, within GFF209at 220.228 kb on - strand, within GFF209at 220.245 kb on + strand, within GFF209at 220.329 kb on + strand, within GFF209at 220.329 kb on + strand, within GFF209at 220.329 kb on + strand, within GFF209at 220.330 kb on - strand, within GFF209at 220.387 kb on - strand, within GFF209at 220.387 kb on - strand, within GFF209at 220.387 kb on - strand, within GFF209at 220.440 kb on + strand, within GFF209at 220.441 kb on - strand, within GFF209at 220.441 kb on - strand, within GFF209at 220.441 kb on - strand, within GFF209at 220.441 kb on - strand, within GFF209at 220.515 kb on + strand, within GFF209at 220.521 kb on + strand, within GFF209at 220.521 kb on + strand, within GFF209at 220.521 kb on + strand, within GFF209at 220.642 kb on - strand, within GFF209at 220.682 kb on - strand, within GFF209at 220.686 kb on + strand, within GFF209at 220.687 kb on - strand, within GFF209at 220.687 kb on - strand, within GFF209at 220.687 kb on - strand, within GFF209at 220.687 kb on - strand, within GFF209at 220.893 kb on + strand, within GFF209at 220.894 kb on - strand, within GFF209at 220.950 kb on + strand, within GFF209at 220.950 kb on + strand, within GFF209at 220.957 kb on - strand, within GFF209at 221.055 kb on + strand, within GFF209at 221.055 kb on + strand, within GFF209at 221.056 kb on - strand, within GFF209at 221.056 kb on - strand, within GFF209at 221.056 kb on - strand, within GFF209at 221.353 kb on - strandat 221.391 kb on + strandat 221.392 kb on - strandat 221.755 kb on - strand, within GFF210at 221.768 kb on - strand, within GFF210at 221.790 kb on + strand, within GFF210at 221.791 kb on - strand, within GFF210at 221.980 kb on - strand, within GFF210at 222.153 kb on + strand, within GFF210at 222.294 kb on + strand, within GFF210at 222.294 kb on + strand, within GFF210at 222.294 kb on + strand, within GFF210at 222.357 kb on + strand, within GFF210at 222.357 kb on + strand, within GFF210

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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217,587 + GFF207 0.85 +0.5
217,587 + GFF207 0.85 -0.3
217,587 + GFF207 0.85 -0.5
217,589 + GFF207 0.86 -0.1
217,589 + GFF207 0.86 -0.3
217,589 + GFF207 0.86 +0.8
217,590 - GFF207 0.87 -0.1
217,590 - GFF207 0.87 -1.0
217,590 - GFF207 0.87 -1.0
217,611 + -0.4
217,612 - +0.9
218,589 + -0.9
218,590 - -0.3
218,650 - -0.3
218,679 + +1.1
218,680 - -0.8
218,730 + -0.9
218,731 - -1.4
218,731 - +0.1
218,731 - -0.8
218,944 + GFF209 0.14 -0.9
218,945 - GFF209 0.14 -0.5
218,991 + GFF209 0.16 -1.2
219,114 + GFF209 0.20 -1.2
219,114 + GFF209 0.20 -0.7
219,180 + GFF209 0.22 -0.1
219,180 + GFF209 0.22 +0.1
219,348 + GFF209 0.28 +0.2
219,348 + GFF209 0.28 +0.2
219,348 + GFF209 0.28 -1.4
219,349 - GFF209 0.28 -0.8
219,465 + GFF209 0.32 -0.3
219,465 + GFF209 0.32 +0.5
219,466 - GFF209 0.32 -0.8
219,466 - GFF209 0.32 -1.3
219,466 - GFF209 0.32 +0.3
219,466 - GFF209 0.32 -1.3
219,466 - GFF209 0.32 -0.7
219,466 - GFF209 0.32 -1.0
219,477 + GFF209 0.33 +0.3
219,477 + GFF209 0.33 -0.2
219,478 - GFF209 0.33 -1.3
219,478 - GFF209 0.33 -0.6
219,478 - GFF209 0.33 +0.8
219,478 - GFF209 0.33 -0.6
219,478 - GFF209 0.33 -0.1
219,777 + GFF209 0.43 -0.6
219,777 + GFF209 0.43 -0.4
219,777 + GFF209 0.43 -1.0
219,778 - GFF209 0.44 -0.7
219,778 - GFF209 0.44 -1.5
219,804 + GFF209 0.44 +0.2
219,804 + GFF209 0.44 -0.5
219,805 - GFF209 0.44 -1.7
219,849 + GFF209 0.46 -0.0
219,849 + GFF209 0.46 -0.5
219,850 - GFF209 0.46 +0.3
220,030 - GFF209 0.52 -0.7
220,227 + GFF209 0.59 -1.7
220,227 + GFF209 0.59 -0.5
220,228 - GFF209 0.59 -0.1
220,228 - GFF209 0.59 -0.3
220,228 - GFF209 0.59 -0.7
220,245 + GFF209 0.60 -1.4
220,329 + GFF209 0.63 -0.3
220,329 + GFF209 0.63 -0.1
220,329 + GFF209 0.63 +0.3
220,330 - GFF209 0.63 -0.6
220,387 - GFF209 0.65 -0.0
220,387 - GFF209 0.65 -0.5
220,387 - GFF209 0.65 -0.9
220,440 + GFF209 0.67 -0.1
220,441 - GFF209 0.67 -0.0
220,441 - GFF209 0.67 -0.9
220,441 - GFF209 0.67 +0.8
220,441 - GFF209 0.67 -0.9
220,515 + GFF209 0.70 +0.8
220,521 + GFF209 0.70 -0.4
220,521 + GFF209 0.70 +0.0
220,521 + GFF209 0.70 -0.4
220,642 - GFF209 0.74 -1.1
220,682 - GFF209 0.75 -0.6
220,686 + GFF209 0.76 -1.0
220,687 - GFF209 0.76 -0.5
220,687 - GFF209 0.76 +0.2
220,687 - GFF209 0.76 +0.4
220,687 - GFF209 0.76 +0.6
220,893 + GFF209 0.83 -1.6
220,894 - GFF209 0.83 +0.5
220,950 + GFF209 0.85 -1.0
220,950 + GFF209 0.85 +1.1
220,957 - GFF209 0.85 -1.8
221,055 + GFF209 0.89 -0.6
221,055 + GFF209 0.89 -0.6
221,056 - GFF209 0.89 +0.0
221,056 - GFF209 0.89 -1.4
221,056 - GFF209 0.89 -1.0
221,353 - -0.4
221,391 + -0.9
221,392 - -0.6
221,755 - GFF210 0.23 -1.4
221,768 - GFF210 0.24 +0.4
221,790 + GFF210 0.25 -0.2
221,791 - GFF210 0.25 -0.7
221,980 - GFF210 0.37 +0.1
222,153 + GFF210 0.48 +0.3
222,294 + GFF210 0.57 -0.4
222,294 + GFF210 0.57 -0.7
222,294 + GFF210 0.57 +0.3
222,357 + GFF210 0.61 +0.3
222,357 + GFF210 0.61 -0.2

Or see this region's nucleotide sequence