Strain Fitness in Xanthobacter sp. DMC5 around GFF2082

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2081 and GFF2082 are separated by 256 nucleotidesGFF2082 and GFF2083 overlap by 4 nucleotides GFF2081 - Glutaminase 1, at 762,029 to 763,054 GFF2081 GFF2082 - Ferrichrome outer membrane transporter/phage receptor, at 763,311 to 765,497 GFF2082 GFF2083 - hypothetical protein, at 765,494 to 766,759 GFF2083 Position (kb) 763 764 765 766Strain fitness (log2 ratio) -2 -1 0 1 2at 762.358 kb on + strand, within GFF2081at 762.426 kb on + strand, within GFF2081at 762.426 kb on + strand, within GFF2081at 762.427 kb on - strand, within GFF2081at 762.912 kb on + strand, within GFF2081at 762.912 kb on + strand, within GFF2081at 762.954 kb on + strandat 762.954 kb on + strandat 762.955 kb on - strandat 762.955 kb on - strandat 762.955 kb on - strandat 763.165 kb on - strandat 763.267 kb on + strandat 763.322 kb on + strandat 763.322 kb on + strandat 763.323 kb on - strandat 763.570 kb on - strand, within GFF2082at 763.618 kb on + strand, within GFF2082at 763.618 kb on + strand, within GFF2082at 763.618 kb on + strand, within GFF2082at 763.618 kb on + strand, within GFF2082at 763.619 kb on - strand, within GFF2082at 763.619 kb on - strand, within GFF2082at 763.619 kb on - strand, within GFF2082at 763.619 kb on - strand, within GFF2082at 763.701 kb on + strand, within GFF2082at 763.702 kb on - strand, within GFF2082at 763.702 kb on - strand, within GFF2082at 763.728 kb on + strand, within GFF2082at 763.758 kb on + strand, within GFF2082at 763.758 kb on + strand, within GFF2082at 763.758 kb on + strand, within GFF2082at 763.758 kb on + strand, within GFF2082at 763.758 kb on + strand, within GFF2082at 763.759 kb on - strand, within GFF2082at 763.759 kb on - strand, within GFF2082at 763.759 kb on - strand, within GFF2082at 763.759 kb on - strand, within GFF2082at 763.759 kb on - strand, within GFF2082at 763.759 kb on - strand, within GFF2082at 763.759 kb on - strand, within GFF2082at 763.851 kb on + strand, within GFF2082at 763.851 kb on + strand, within GFF2082at 763.852 kb on - strand, within GFF2082at 763.852 kb on - strand, within GFF2082at 763.899 kb on + strand, within GFF2082at 763.900 kb on - strand, within GFF2082at 764.055 kb on + strand, within GFF2082at 764.055 kb on + strand, within GFF2082at 764.056 kb on - strand, within GFF2082at 764.100 kb on + strand, within GFF2082at 764.100 kb on + strand, within GFF2082at 764.100 kb on + strand, within GFF2082at 764.100 kb on + strand, within GFF2082at 764.100 kb on + strand, within GFF2082at 764.100 kb on + strand, within GFF2082at 764.101 kb on - strand, within GFF2082at 764.101 kb on - strand, within GFF2082at 764.101 kb on - strand, within GFF2082at 764.105 kb on + strand, within GFF2082at 764.262 kb on + strand, within GFF2082at 764.262 kb on + strand, within GFF2082at 764.262 kb on + strand, within GFF2082at 764.262 kb on + strand, within GFF2082at 764.262 kb on + strand, within GFF2082at 764.262 kb on + strand, within GFF2082at 764.263 kb on - strand, within GFF2082at 764.263 kb on - strand, within GFF2082at 764.263 kb on - strand, within GFF2082at 764.263 kb on - strand, within GFF2082at 764.298 kb on + strand, within GFF2082at 764.298 kb on + strand, within GFF2082at 764.299 kb on - strand, within GFF2082at 764.436 kb on + strand, within GFF2082at 764.436 kb on + strand, within GFF2082at 764.436 kb on + strand, within GFF2082at 764.437 kb on - strand, within GFF2082at 764.437 kb on - strand, within GFF2082at 764.533 kb on - strand, within GFF2082at 764.553 kb on + strand, within GFF2082at 764.554 kb on - strand, within GFF2082at 764.673 kb on + strand, within GFF2082at 764.674 kb on - strand, within GFF2082at 764.821 kb on - strand, within GFF2082at 764.847 kb on + strand, within GFF2082at 764.847 kb on + strand, within GFF2082at 764.848 kb on - strand, within GFF2082at 764.856 kb on + strand, within GFF2082at 764.857 kb on - strand, within GFF2082at 764.932 kb on - strand, within GFF2082at 764.932 kb on - strand, within GFF2082at 764.932 kb on - strand, within GFF2082at 764.949 kb on + strand, within GFF2082at 764.950 kb on - strand, within GFF2082at 765.129 kb on + strand, within GFF2082at 765.129 kb on + strand, within GFF2082at 765.129 kb on + strand, within GFF2082at 765.130 kb on - strand, within GFF2082at 765.130 kb on - strand, within GFF2082at 765.130 kb on - strand, within GFF2082at 765.231 kb on + strand, within GFF2082at 765.231 kb on + strand, within GFF2082at 765.232 kb on - strand, within GFF2082at 765.286 kb on - strandat 765.339 kb on + strandat 765.361 kb on - strandat 765.364 kb on - strandat 765.447 kb on + strandat 765.447 kb on + strandat 765.486 kb on + strandat 765.853 kb on + strand, within GFF2083at 765.853 kb on + strand, within GFF2083at 765.854 kb on - strand, within GFF2083at 765.947 kb on + strand, within GFF2083at 765.983 kb on + strand, within GFF2083at 765.983 kb on + strand, within GFF2083at 765.983 kb on + strand, within GFF2083at 765.983 kb on + strand, within GFF2083at 765.984 kb on - strand, within GFF2083at 765.984 kb on - strand, within GFF2083at 765.984 kb on - strand, within GFF2083at 765.984 kb on - strand, within GFF2083at 765.984 kb on - strand, within GFF2083at 765.984 kb on - strand, within GFF2083at 766.173 kb on + strand, within GFF2083at 766.174 kb on - strand, within GFF2083at 766.391 kb on + strand, within GFF2083at 766.392 kb on - strand, within GFF2083at 766.404 kb on - strand, within GFF2083at 766.404 kb on - strand, within GFF2083

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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762,358 + GFF2081 0.32 -0.5
762,426 + GFF2081 0.39 -0.5
762,426 + GFF2081 0.39 -1.4
762,427 - GFF2081 0.39 +0.4
762,912 + GFF2081 0.86 -0.5
762,912 + GFF2081 0.86 +0.9
762,954 + -1.2
762,954 + +0.5
762,955 - -0.2
762,955 - -1.0
762,955 - +0.3
763,165 - +0.6
763,267 + -2.0
763,322 + +0.3
763,322 + +0.5
763,323 - -0.0
763,570 - GFF2082 0.12 -0.3
763,618 + GFF2082 0.14 +0.6
763,618 + GFF2082 0.14 +0.3
763,618 + GFF2082 0.14 +0.2
763,618 + GFF2082 0.14 -0.8
763,619 - GFF2082 0.14 -0.1
763,619 - GFF2082 0.14 -0.7
763,619 - GFF2082 0.14 +0.3
763,619 - GFF2082 0.14 +1.0
763,701 + GFF2082 0.18 -1.7
763,702 - GFF2082 0.18 +1.0
763,702 - GFF2082 0.18 +0.2
763,728 + GFF2082 0.19 +1.8
763,758 + GFF2082 0.20 +0.3
763,758 + GFF2082 0.20 -0.1
763,758 + GFF2082 0.20 +0.3
763,758 + GFF2082 0.20 +0.2
763,758 + GFF2082 0.20 +0.3
763,759 - GFF2082 0.20 +0.0
763,759 - GFF2082 0.20 +0.2
763,759 - GFF2082 0.20 -0.1
763,759 - GFF2082 0.20 +0.3
763,759 - GFF2082 0.20 -0.4
763,759 - GFF2082 0.20 +0.5
763,759 - GFF2082 0.20 -0.1
763,851 + GFF2082 0.25 +1.4
763,851 + GFF2082 0.25 -0.6
763,852 - GFF2082 0.25 -0.5
763,852 - GFF2082 0.25 -0.1
763,899 + GFF2082 0.27 +1.0
763,900 - GFF2082 0.27 +0.1
764,055 + GFF2082 0.34 -0.8
764,055 + GFF2082 0.34 +0.3
764,056 - GFF2082 0.34 +0.5
764,100 + GFF2082 0.36 -0.1
764,100 + GFF2082 0.36 +0.1
764,100 + GFF2082 0.36 -0.3
764,100 + GFF2082 0.36 -0.9
764,100 + GFF2082 0.36 -0.6
764,100 + GFF2082 0.36 -0.8
764,101 - GFF2082 0.36 +0.0
764,101 - GFF2082 0.36 -0.1
764,101 - GFF2082 0.36 +0.0
764,105 + GFF2082 0.36 +0.3
764,262 + GFF2082 0.43 +0.6
764,262 + GFF2082 0.43 +0.1
764,262 + GFF2082 0.43 +0.1
764,262 + GFF2082 0.43 -0.1
764,262 + GFF2082 0.43 +0.0
764,262 + GFF2082 0.43 -1.4
764,263 - GFF2082 0.44 +0.5
764,263 - GFF2082 0.44 -0.0
764,263 - GFF2082 0.44 -0.9
764,263 - GFF2082 0.44 +0.3
764,298 + GFF2082 0.45 -0.6
764,298 + GFF2082 0.45 +0.1
764,299 - GFF2082 0.45 +0.7
764,436 + GFF2082 0.51 -0.3
764,436 + GFF2082 0.51 +0.8
764,436 + GFF2082 0.51 -0.4
764,437 - GFF2082 0.51 +0.2
764,437 - GFF2082 0.51 -1.7
764,533 - GFF2082 0.56 +0.5
764,553 + GFF2082 0.57 +0.0
764,554 - GFF2082 0.57 +0.7
764,673 + GFF2082 0.62 -0.1
764,674 - GFF2082 0.62 +0.5
764,821 - GFF2082 0.69 +0.0
764,847 + GFF2082 0.70 +0.0
764,847 + GFF2082 0.70 +0.1
764,848 - GFF2082 0.70 +1.1
764,856 + GFF2082 0.71 -0.9
764,857 - GFF2082 0.71 -0.3
764,932 - GFF2082 0.74 +0.8
764,932 - GFF2082 0.74 +0.7
764,932 - GFF2082 0.74 -0.2
764,949 + GFF2082 0.75 -0.3
764,950 - GFF2082 0.75 -0.3
765,129 + GFF2082 0.83 +0.2
765,129 + GFF2082 0.83 -0.3
765,129 + GFF2082 0.83 -0.7
765,130 - GFF2082 0.83 +0.3
765,130 - GFF2082 0.83 -0.4
765,130 - GFF2082 0.83 +0.2
765,231 + GFF2082 0.88 +0.5
765,231 + GFF2082 0.88 +0.2
765,232 - GFF2082 0.88 +0.3
765,286 - -0.0
765,339 + +0.5
765,361 - -0.0
765,364 - -0.3
765,447 + +0.1
765,447 + -0.4
765,486 + -0.4
765,853 + GFF2083 0.28 +0.3
765,853 + GFF2083 0.28 +0.3
765,854 - GFF2083 0.28 -0.2
765,947 + GFF2083 0.36 -0.9
765,983 + GFF2083 0.39 -0.2
765,983 + GFF2083 0.39 +0.1
765,983 + GFF2083 0.39 -0.2
765,983 + GFF2083 0.39 +0.1
765,984 - GFF2083 0.39 -0.2
765,984 - GFF2083 0.39 -0.3
765,984 - GFF2083 0.39 -0.4
765,984 - GFF2083 0.39 -0.6
765,984 - GFF2083 0.39 +0.8
765,984 - GFF2083 0.39 -0.2
766,173 + GFF2083 0.54 -1.0
766,174 - GFF2083 0.54 +1.0
766,391 + GFF2083 0.71 -0.5
766,392 - GFF2083 0.71 -0.7
766,404 - GFF2083 0.72 +0.1
766,404 - GFF2083 0.72 -1.1

Or see this region's nucleotide sequence