Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2065 and GFF2066 are separated by 15 nucleotides GFF2066 and GFF2067 overlap by 4 nucleotides GFF2067 and GFF2068 are separated by 111 nucleotides
GFF2065 - Acetoin catabolism regulatory protein, at 744,673 to 746,610
GFF2065
GFF2066 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 746,626 to 747,432
GFF2066
GFF2067 - HTH-type transcriptional regulator DegA, at 747,429 to 748,526
GFF2067
GFF2068 - 2-hydroxy-3-oxopropionate reductase, at 748,638 to 749,558
GFF2068
Position (kb) 747
748
749 Strain fitness (log2 ratio) -1
0
1 at 746.627 kb on + strand at 746.628 kb on - strand at 746.628 kb on - strand at 747.024 kb on + strand, within GFF2066 at 747.024 kb on + strand, within GFF2066 at 747.024 kb on + strand, within GFF2066 at 747.024 kb on + strand, within GFF2066 at 747.024 kb on + strand, within GFF2066 at 747.418 kb on + strand at 747.433 kb on - strand at 747.638 kb on - strand, within GFF2067 at 747.668 kb on + strand, within GFF2067 at 748.131 kb on + strand, within GFF2067 at 748.132 kb on - strand, within GFF2067 at 748.132 kb on - strand, within GFF2067 at 748.321 kb on + strand, within GFF2067 at 748.537 kb on + strand at 748.538 kb on - strand at 748.538 kb on - strand at 748.538 kb on - strand at 749.187 kb on + strand, within GFF2068 at 749.199 kb on + strand, within GFF2068 at 749.199 kb on + strand, within GFF2068 at 749.199 kb on + strand, within GFF2068 at 749.200 kb on - strand, within GFF2068 at 749.292 kb on + strand, within GFF2068 at 749.293 kb on - strand, within GFF2068 at 749.311 kb on - strand, within GFF2068 at 749.376 kb on + strand, within GFF2068 at 749.376 kb on + strand, within GFF2068 at 749.376 kb on + strand, within GFF2068 at 749.441 kb on - strand, within GFF2068 at 749.442 kb on + strand, within GFF2068 at 749.443 kb on - strand, within GFF2068 at 749.474 kb on + strand at 749.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 746,627 + +0.1 746,628 - +0.5 746,628 - -0.1 747,024 + GFF2066 0.49 +0.1 747,024 + GFF2066 0.49 +0.2 747,024 + GFF2066 0.49 +0.2 747,024 + GFF2066 0.49 -0.3 747,024 + GFF2066 0.49 -0.6 747,418 + +0.1 747,433 - +0.4 747,638 - GFF2067 0.19 +0.4 747,668 + GFF2067 0.22 +0.0 748,131 + GFF2067 0.64 +0.2 748,132 - GFF2067 0.64 -0.0 748,132 - GFF2067 0.64 +0.7 748,321 + GFF2067 0.81 -0.4 748,537 + +0.8 748,538 - +0.8 748,538 - -0.7 748,538 - -0.2 749,187 + GFF2068 0.60 -0.8 749,199 + GFF2068 0.61 +0.2 749,199 + GFF2068 0.61 -0.9 749,199 + GFF2068 0.61 +0.1 749,200 - GFF2068 0.61 +1.2 749,292 + GFF2068 0.71 -0.8 749,293 - GFF2068 0.71 +0.3 749,311 - GFF2068 0.73 -0.4 749,376 + GFF2068 0.80 -0.5 749,376 + GFF2068 0.80 +0.2 749,376 + GFF2068 0.80 +0.8 749,441 - GFF2068 0.87 -0.3 749,442 + GFF2068 0.87 -0.2 749,443 - GFF2068 0.87 +0.2 749,474 + -0.8 749,474 + -0.1
Or see this region's nucleotide sequence