Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2057 and GFF2058 overlap by 4 nucleotides GFF2058 and GFF2059 overlap by 1 nucleotides GFF2059 and GFF2060 overlap by 4 nucleotides
GFF2057 - Hydrogenase-4 component B, at 734,408 to 736,429
GFF2057
GFF2058 - Formate hydrogenlyase subunit 4, at 736,426 to 737,373
GFF2058
GFF2059 - hypothetical protein, at 737,373 to 738,098
GFF2059
GFF2060 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 738,095 to 739,552
GFF2060
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1 at 735.681 kb on + strand, within GFF2057 at 735.681 kb on + strand, within GFF2057 at 735.758 kb on + strand, within GFF2057 at 735.758 kb on + strand, within GFF2057 at 736.002 kb on - strand, within GFF2057 at 736.004 kb on - strand, within GFF2057 at 736.014 kb on + strand, within GFF2057 at 736.142 kb on + strand, within GFF2057 at 736.142 kb on + strand, within GFF2057 at 736.142 kb on + strand, within GFF2057 at 736.349 kb on + strand at 736.350 kb on - strand at 736.350 kb on - strand at 736.420 kb on - strand at 736.420 kb on - strand at 736.558 kb on + strand, within GFF2058 at 736.558 kb on + strand, within GFF2058 at 736.636 kb on + strand, within GFF2058 at 736.946 kb on + strand, within GFF2058 at 736.947 kb on - strand, within GFF2058 at 737.072 kb on - strand, within GFF2058 at 737.218 kb on + strand, within GFF2058 at 737.218 kb on + strand, within GFF2058 at 737.496 kb on + strand, within GFF2059 at 737.497 kb on - strand, within GFF2059 at 737.512 kb on - strand, within GFF2059 at 737.512 kb on - strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.601 kb on + strand, within GFF2059 at 737.602 kb on - strand, within GFF2059 at 737.602 kb on - strand, within GFF2059 at 737.602 kb on - strand, within GFF2059 at 737.602 kb on - strand, within GFF2059 at 738.120 kb on + strand at 738.120 kb on + strand at 738.188 kb on + strand at 738.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 735,681 + GFF2057 0.63 -0.3 735,681 + GFF2057 0.63 +0.4 735,758 + GFF2057 0.67 -0.6 735,758 + GFF2057 0.67 +0.2 736,002 - GFF2057 0.79 -0.7 736,004 - GFF2057 0.79 -0.6 736,014 + GFF2057 0.79 -0.0 736,142 + GFF2057 0.86 +0.4 736,142 + GFF2057 0.86 -0.3 736,142 + GFF2057 0.86 -0.8 736,349 + +0.6 736,350 - +0.4 736,350 - -2.0 736,420 - +1.1 736,420 - -0.0 736,558 + GFF2058 0.14 +0.1 736,558 + GFF2058 0.14 +0.4 736,636 + GFF2058 0.22 +0.4 736,946 + GFF2058 0.55 -0.4 736,947 - GFF2058 0.55 +0.3 737,072 - GFF2058 0.68 -1.0 737,218 + GFF2058 0.84 -1.3 737,218 + GFF2058 0.84 +0.1 737,496 + GFF2059 0.17 +0.4 737,497 - GFF2059 0.17 +0.3 737,512 - GFF2059 0.19 +0.2 737,512 - GFF2059 0.19 +0.4 737,601 + GFF2059 0.31 +0.5 737,601 + GFF2059 0.31 +0.0 737,601 + GFF2059 0.31 +0.1 737,601 + GFF2059 0.31 +0.6 737,601 + GFF2059 0.31 +0.2 737,601 + GFF2059 0.31 -0.0 737,601 + GFF2059 0.31 -0.1 737,602 - GFF2059 0.32 -0.0 737,602 - GFF2059 0.32 -0.6 737,602 - GFF2059 0.32 +0.0 737,602 - GFF2059 0.32 +0.4 738,120 + -0.3 738,120 + +1.4 738,188 + -0.0 738,189 - +0.4
Or see this region's nucleotide sequence