Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2055 and GFF2056 are separated by 143 nucleotides GFF2056 and GFF2057 overlap by 4 nucleotides GFF2057 and GFF2058 overlap by 4 nucleotides GFF2058 and GFF2059 overlap by 1 nucleotides
GFF2055 - hypothetical protein, at 733,315 to 733,998
GFF2055
GFF2056 - hypothetical protein, at 734,142 to 734,411
GFF2056
GFF2057 - Hydrogenase-4 component B, at 734,408 to 736,429
GFF2057
GFF2058 - Formate hydrogenlyase subunit 4, at 736,426 to 737,373
GFF2058
GFF2059 - hypothetical protein, at 737,373 to 738,098
GFF2059
Position (kb) 734
735
736
737 Strain fitness (log2 ratio) -2
-1
0
1 at 733.586 kb on + strand, within GFF2055 at 733.675 kb on + strand, within GFF2055 at 733.711 kb on + strand, within GFF2055 at 733.712 kb on - strand, within GFF2055 at 733.739 kb on - strand, within GFF2055 at 734.069 kb on - strand at 734.071 kb on + strand at 734.100 kb on + strand at 734.100 kb on + strand at 734.101 kb on - strand at 734.101 kb on - strand at 734.525 kb on + strand at 734.526 kb on - strand at 734.526 kb on - strand at 734.526 kb on - strand at 734.708 kb on + strand, within GFF2057 at 734.720 kb on + strand, within GFF2057 at 734.813 kb on + strand, within GFF2057 at 734.814 kb on - strand, within GFF2057 at 734.814 kb on - strand, within GFF2057 at 734.814 kb on - strand, within GFF2057 at 734.814 kb on - strand, within GFF2057 at 734.912 kb on + strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 734.913 kb on - strand, within GFF2057 at 735.305 kb on - strand, within GFF2057 at 735.340 kb on + strand, within GFF2057 at 735.681 kb on + strand, within GFF2057 at 735.681 kb on + strand, within GFF2057 at 735.758 kb on + strand, within GFF2057 at 735.758 kb on + strand, within GFF2057 at 736.002 kb on - strand, within GFF2057 at 736.004 kb on - strand, within GFF2057 at 736.014 kb on + strand, within GFF2057 at 736.142 kb on + strand, within GFF2057 at 736.142 kb on + strand, within GFF2057 at 736.142 kb on + strand, within GFF2057 at 736.349 kb on + strand at 736.350 kb on - strand at 736.350 kb on - strand at 736.420 kb on - strand at 736.420 kb on - strand at 736.558 kb on + strand, within GFF2058 at 736.558 kb on + strand, within GFF2058 at 736.636 kb on + strand, within GFF2058 at 736.946 kb on + strand, within GFF2058 at 736.947 kb on - strand, within GFF2058 at 737.072 kb on - strand, within GFF2058 at 737.218 kb on + strand, within GFF2058 at 737.218 kb on + strand, within GFF2058
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 733,586 + GFF2055 0.40 -0.0 733,675 + GFF2055 0.53 +0.5 733,711 + GFF2055 0.58 -0.0 733,712 - GFF2055 0.58 +0.1 733,739 - GFF2055 0.62 -0.3 734,069 - -0.3 734,071 + +0.1 734,100 + +0.2 734,100 + -0.0 734,101 - +0.4 734,101 - +0.1 734,525 + -0.7 734,526 - +0.6 734,526 - +0.9 734,526 - +0.0 734,708 + GFF2057 0.15 +0.3 734,720 + GFF2057 0.15 +0.5 734,813 + GFF2057 0.20 -0.7 734,814 - GFF2057 0.20 -0.1 734,814 - GFF2057 0.20 +0.3 734,814 - GFF2057 0.20 +0.0 734,814 - GFF2057 0.20 -0.9 734,912 + GFF2057 0.25 -0.6 734,913 - GFF2057 0.25 +0.3 734,913 - GFF2057 0.25 -0.2 734,913 - GFF2057 0.25 -0.2 734,913 - GFF2057 0.25 -0.4 734,913 - GFF2057 0.25 -0.1 735,305 - GFF2057 0.44 +0.4 735,340 + GFF2057 0.46 +0.7 735,681 + GFF2057 0.63 -0.3 735,681 + GFF2057 0.63 +0.4 735,758 + GFF2057 0.67 -0.6 735,758 + GFF2057 0.67 +0.2 736,002 - GFF2057 0.79 -0.7 736,004 - GFF2057 0.79 -0.6 736,014 + GFF2057 0.79 -0.0 736,142 + GFF2057 0.86 +0.4 736,142 + GFF2057 0.86 -0.3 736,142 + GFF2057 0.86 -0.8 736,349 + +0.6 736,350 - +0.4 736,350 - -2.0 736,420 - +1.1 736,420 - -0.0 736,558 + GFF2058 0.14 +0.1 736,558 + GFF2058 0.14 +0.4 736,636 + GFF2058 0.22 +0.4 736,946 + GFF2058 0.55 -0.4 736,947 - GFF2058 0.55 +0.3 737,072 - GFF2058 0.68 -1.0 737,218 + GFF2058 0.84 -1.3 737,218 + GFF2058 0.84 +0.1
Or see this region's nucleotide sequence