Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2040 and GFF2041 are separated by 123 nucleotides GFF2041 and GFF2042 are separated by 7 nucleotides GFF2042 and GFF2043 are separated by 100 nucleotides GFF2043 and GFF2044 are separated by 37 nucleotides
GFF2040 - Formamidopyrimidine-DNA glycosylase, at 714,229 to 715,107
GFF2040
GFF2041 - hypothetical protein, at 715,231 to 715,584
GFF2041
GFF2042 - hypothetical protein, at 715,592 to 716,746
GFF2042
GFF2043 - Peptide deformylase, at 716,847 to 717,365
GFF2043
GFF2044 - Methionyl-tRNA formyltransferase, at 717,403 to 718,326
GFF2044
Position (kb) 715
716
717 Strain fitness (log2 ratio) -2
-1
0
1 at 714.639 kb on - strand, within GFF2040 at 714.713 kb on + strand, within GFF2040 at 714.713 kb on + strand, within GFF2040 at 714.714 kb on - strand, within GFF2040 at 714.932 kb on + strand, within GFF2040 at 714.932 kb on + strand, within GFF2040 at 714.933 kb on - strand, within GFF2040 at 715.117 kb on - strand at 715.298 kb on + strand, within GFF2041 at 715.303 kb on + strand, within GFF2041 at 715.303 kb on + strand, within GFF2041 at 715.461 kb on - strand, within GFF2041 at 715.532 kb on + strand, within GFF2041 at 715.533 kb on - strand, within GFF2041 at 715.533 kb on - strand, within GFF2041 at 715.565 kb on + strand at 715.566 kb on - strand at 715.566 kb on - strand at 715.636 kb on - strand at 715.761 kb on - strand, within GFF2042 at 715.944 kb on + strand, within GFF2042 at 715.944 kb on + strand, within GFF2042 at 715.944 kb on + strand, within GFF2042 at 716.004 kb on + strand, within GFF2042 at 716.023 kb on - strand, within GFF2042
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 714,639 - GFF2040 0.47 +0.1 714,713 + GFF2040 0.55 -0.6 714,713 + GFF2040 0.55 -0.0 714,714 - GFF2040 0.55 -0.3 714,932 + GFF2040 0.80 +0.2 714,932 + GFF2040 0.80 -0.7 714,933 - GFF2040 0.80 -0.1 715,117 - +0.4 715,298 + GFF2041 0.19 -0.3 715,303 + GFF2041 0.20 -0.8 715,303 + GFF2041 0.20 +0.6 715,461 - GFF2041 0.65 +1.1 715,532 + GFF2041 0.85 +0.6 715,533 - GFF2041 0.85 +1.0 715,533 - GFF2041 0.85 -0.2 715,565 + -1.9 715,566 - -0.8 715,566 - -0.2 715,636 - -0.3 715,761 - GFF2042 0.15 -0.1 715,944 + GFF2042 0.30 +0.5 715,944 + GFF2042 0.30 +0.4 715,944 + GFF2042 0.30 +0.3 716,004 + GFF2042 0.36 -0.1 716,023 - GFF2042 0.37 -0.2
Or see this region's nucleotide sequence