Strain Fitness in Xanthobacter sp. DMC5 around GFF2029

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2028 and GFF2029 are separated by 35 nucleotidesGFF2029 and GFF2030 are separated by 12 nucleotidesGFF2030 and GFF2031 are separated by 31 nucleotides GFF2028 - D-malate dehydrogenase [decarboxylating], at 701,368 to 702,441 GFF2028 GFF2029 - Glutarate-semialdehyde dehydrogenase, at 702,477 to 703,970 GFF2029 GFF2030 - Glyoxylate/hydroxypyruvate reductase A, at 703,983 to 704,909 GFF2030 GFF2031 - hypothetical protein, at 704,941 to 705,294 GFF2031 Position (kb) 702 703 704Strain fitness (log2 ratio) -2 -1 0 1at 701.575 kb on - strand, within GFF2028at 701.777 kb on + strand, within GFF2028at 701.777 kb on + strand, within GFF2028at 701.777 kb on + strand, within GFF2028at 701.777 kb on + strand, within GFF2028at 701.778 kb on - strand, within GFF2028at 701.837 kb on + strand, within GFF2028at 701.838 kb on - strand, within GFF2028at 701.988 kb on + strand, within GFF2028at 701.989 kb on - strand, within GFF2028at 701.989 kb on - strand, within GFF2028at 701.996 kb on + strand, within GFF2028at 701.996 kb on + strand, within GFF2028at 701.996 kb on + strand, within GFF2028at 701.997 kb on - strand, within GFF2028at 701.997 kb on - strand, within GFF2028at 702.131 kb on + strand, within GFF2028at 702.131 kb on + strand, within GFF2028at 702.131 kb on + strand, within GFF2028at 702.131 kb on + strand, within GFF2028at 702.132 kb on - strand, within GFF2028at 702.132 kb on - strand, within GFF2028at 702.132 kb on - strand, within GFF2028at 702.132 kb on - strand, within GFF2028at 702.196 kb on - strand, within GFF2028at 702.287 kb on + strand, within GFF2028at 702.287 kb on + strand, within GFF2028at 702.287 kb on + strand, within GFF2028at 702.287 kb on + strand, within GFF2028at 702.288 kb on - strand, within GFF2028at 702.290 kb on + strand, within GFF2028at 702.290 kb on + strand, within GFF2028at 702.291 kb on - strand, within GFF2028at 702.339 kb on - strandat 702.425 kb on + strandat 702.425 kb on + strandat 702.426 kb on - strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.460 kb on + strandat 702.461 kb on - strandat 702.461 kb on - strandat 702.461 kb on - strandat 702.461 kb on - strandat 702.461 kb on - strandat 702.510 kb on - strandat 702.510 kb on - strandat 702.510 kb on - strandat 702.532 kb on + strandat 702.550 kb on + strandat 702.551 kb on - strandat 702.697 kb on + strand, within GFF2029at 702.697 kb on + strand, within GFF2029at 702.697 kb on + strand, within GFF2029at 702.712 kb on + strand, within GFF2029at 702.853 kb on - strand, within GFF2029at 703.567 kb on + strand, within GFF2029at 703.988 kb on - strandat 704.533 kb on + strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.573 kb on - strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.617 kb on + strand, within GFF2030at 704.618 kb on - strand, within GFF2030at 704.618 kb on - strand, within GFF2030at 704.618 kb on - strand, within GFF2030at 704.618 kb on - strand, within GFF2030at 704.721 kb on + strand, within GFF2030at 704.721 kb on + strand, within GFF2030at 704.722 kb on - strand, within GFF2030at 704.722 kb on - strand, within GFF2030at 704.722 kb on - strand, within GFF2030at 704.896 kb on + strandat 704.896 kb on + strandat 704.896 kb on + strandat 704.896 kb on + strandat 704.897 kb on - strandat 704.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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701,575 - GFF2028 0.19 -1.7
701,777 + GFF2028 0.38 +0.1
701,777 + GFF2028 0.38 +0.2
701,777 + GFF2028 0.38 -0.4
701,777 + GFF2028 0.38 -0.1
701,778 - GFF2028 0.38 +0.4
701,837 + GFF2028 0.44 +0.4
701,838 - GFF2028 0.44 -0.1
701,988 + GFF2028 0.58 -0.4
701,989 - GFF2028 0.58 +0.8
701,989 - GFF2028 0.58 +0.0
701,996 + GFF2028 0.58 -0.3
701,996 + GFF2028 0.58 -0.9
701,996 + GFF2028 0.58 +1.6
701,997 - GFF2028 0.59 -0.2
701,997 - GFF2028 0.59 -0.5
702,131 + GFF2028 0.71 -0.4
702,131 + GFF2028 0.71 -0.5
702,131 + GFF2028 0.71 -0.1
702,131 + GFF2028 0.71 +0.6
702,132 - GFF2028 0.71 -0.0
702,132 - GFF2028 0.71 -0.6
702,132 - GFF2028 0.71 -0.4
702,132 - GFF2028 0.71 +0.4
702,196 - GFF2028 0.77 -0.5
702,287 + GFF2028 0.86 -0.2
702,287 + GFF2028 0.86 -0.9
702,287 + GFF2028 0.86 -0.3
702,287 + GFF2028 0.86 -0.0
702,288 - GFF2028 0.86 -0.7
702,290 + GFF2028 0.86 +0.1
702,290 + GFF2028 0.86 +0.7
702,291 - GFF2028 0.86 -1.9
702,339 - -0.4
702,425 + +0.7
702,425 + -0.5
702,426 - +1.5
702,460 + +0.5
702,460 + +0.7
702,460 + -0.3
702,460 + -1.5
702,460 + -1.1
702,460 + -0.3
702,460 + +0.8
702,461 - -0.3
702,461 - +0.1
702,461 - -0.2
702,461 - +0.4
702,461 - -0.0
702,510 - -0.3
702,510 - +0.3
702,510 - -0.1
702,532 + +0.0
702,550 + -0.0
702,551 - -0.9
702,697 + GFF2029 0.15 +0.1
702,697 + GFF2029 0.15 +0.1
702,697 + GFF2029 0.15 +1.3
702,712 + GFF2029 0.16 +0.3
702,853 - GFF2029 0.25 +0.1
703,567 + GFF2029 0.73 +0.6
703,988 - -0.3
704,533 + GFF2030 0.59 +0.6
704,573 - GFF2030 0.64 +0.2
704,573 - GFF2030 0.64 -0.7
704,573 - GFF2030 0.64 +1.2
704,573 - GFF2030 0.64 -0.5
704,573 - GFF2030 0.64 +0.0
704,573 - GFF2030 0.64 +0.0
704,617 + GFF2030 0.68 -0.5
704,617 + GFF2030 0.68 -0.9
704,617 + GFF2030 0.68 +1.0
704,617 + GFF2030 0.68 +0.5
704,617 + GFF2030 0.68 -0.5
704,617 + GFF2030 0.68 +0.2
704,618 - GFF2030 0.69 +0.8
704,618 - GFF2030 0.69 -0.0
704,618 - GFF2030 0.69 -1.0
704,618 - GFF2030 0.69 +0.0
704,721 + GFF2030 0.80 -0.6
704,721 + GFF2030 0.80 -0.0
704,722 - GFF2030 0.80 +0.2
704,722 - GFF2030 0.80 -0.5
704,722 - GFF2030 0.80 +1.3
704,896 + -0.5
704,896 + -1.3
704,896 + +0.7
704,896 + -0.6
704,897 - +0.4
704,897 - -0.2

Or see this region's nucleotide sequence