Strain Fitness in Xanthobacter sp. DMC5 around GFF2023

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2020 and GFF2021 are separated by 12 nucleotidesGFF2021 and GFF2022 are separated by 166 nucleotidesGFF2022 and GFF2023 overlap by 1 nucleotidesGFF2023 and GFF2024 overlap by 4 nucleotides GFF2020 - Cytochrome bd-I ubiquinol oxidase subunit 2, at 693,457 to 694,614 GFF2020 GFF2021 - hypothetical protein, at 694,627 to 694,752 GFF2021 GFF2022 - hypothetical protein, at 694,919 to 695,359 GFF2022 GFF2023 - hypothetical protein, at 695,359 to 696,873 GFF2023 GFF2024 - hypothetical protein, at 696,870 to 697,937 GFF2024 Position (kb) 695 696 697Strain fitness (log2 ratio) -2 -1 0 1at 694.534 kb on + strandat 694.535 kb on - strandat 694.535 kb on - strandat 694.535 kb on - strandat 694.549 kb on + strandat 694.550 kb on - strandat 694.609 kb on + strandat 694.610 kb on - strandat 694.633 kb on + strandat 694.634 kb on - strandat 694.634 kb on - strandat 694.634 kb on - strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.750 kb on + strandat 694.751 kb on - strandat 694.751 kb on - strandat 694.880 kb on + strandat 695.114 kb on + strand, within GFF2022at 695.115 kb on - strand, within GFF2022at 695.533 kb on + strand, within GFF2023at 695.626 kb on + strand, within GFF2023at 695.626 kb on + strand, within GFF2023at 695.627 kb on - strand, within GFF2023at 695.627 kb on - strand, within GFF2023at 695.716 kb on + strand, within GFF2023at 695.717 kb on - strand, within GFF2023at 695.717 kb on - strand, within GFF2023at 695.718 kb on + strand, within GFF2023at 695.719 kb on - strand, within GFF2023at 695.719 kb on - strand, within GFF2023at 695.719 kb on - strand, within GFF2023at 696.079 kb on + strand, within GFF2023at 696.080 kb on - strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.082 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.328 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.343 kb on + strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.344 kb on - strand, within GFF2023at 696.349 kb on + strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.350 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.377 kb on - strand, within GFF2023at 696.418 kb on + strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.419 kb on - strand, within GFF2023at 696.568 kb on + strand, within GFF2023at 696.635 kb on - strand, within GFF2023at 696.715 kb on + strand, within GFF2023at 697.017 kb on + strand, within GFF2024at 697.017 kb on + strand, within GFF2024at 697.047 kb on + strand, within GFF2024at 697.062 kb on + strand, within GFF2024at 697.062 kb on + strand, within GFF2024at 697.063 kb on - strand, within GFF2024at 697.063 kb on - strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.146 kb on + strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.147 kb on - strand, within GFF2024at 697.148 kb on + strand, within GFF2024at 697.148 kb on + strand, within GFF2024at 697.149 kb on - strand, within GFF2024at 697.149 kb on - strand, within GFF2024at 697.155 kb on + strand, within GFF2024at 697.155 kb on + strand, within GFF2024at 697.156 kb on - strand, within GFF2024at 697.236 kb on + strand, within GFF2024at 697.237 kb on - strand, within GFF2024at 697.237 kb on - strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.248 kb on + strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.249 kb on - strand, within GFF2024at 697.435 kb on - strand, within GFF2024at 697.815 kb on + strand, within GFF2024at 697.816 kb on - strand, within GFF2024at 697.872 kb on + strandat 697.872 kb on + strandat 697.872 kb on + strandat 697.873 kb on - strandat 697.873 kb on - strandat 697.873 kb on - strandat 697.873 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
694,534 + -0.1
694,535 - +0.3
694,535 - +0.2
694,535 - -0.4
694,549 + -0.3
694,550 - +1.5
694,609 + +0.9
694,610 - -0.6
694,633 + -0.5
694,634 - +0.3
694,634 - -1.2
694,634 - +0.4
694,750 + -0.0
694,750 + -0.0
694,750 + -0.9
694,750 + -1.3
694,750 + +0.3
694,750 + -0.2
694,751 - -0.3
694,751 - -0.7
694,880 + -2.0
695,114 + GFF2022 0.44 +0.1
695,115 - GFF2022 0.44 +0.0
695,533 + GFF2023 0.11 +0.8
695,626 + GFF2023 0.18 +0.1
695,626 + GFF2023 0.18 -1.0
695,627 - GFF2023 0.18 +0.1
695,627 - GFF2023 0.18 -0.6
695,716 + GFF2023 0.24 -0.1
695,717 - GFF2023 0.24 -0.1
695,717 - GFF2023 0.24 +0.1
695,718 + GFF2023 0.24 -0.3
695,719 - GFF2023 0.24 -0.2
695,719 - GFF2023 0.24 -0.7
695,719 - GFF2023 0.24 -1.1
696,079 + GFF2023 0.48 +0.8
696,080 - GFF2023 0.48 +0.5
696,082 + GFF2023 0.48 +0.7
696,082 + GFF2023 0.48 -0.3
696,082 + GFF2023 0.48 -0.3
696,328 + GFF2023 0.64 -0.1
696,328 + GFF2023 0.64 +0.5
696,328 + GFF2023 0.64 +0.2
696,343 + GFF2023 0.65 -0.5
696,343 + GFF2023 0.65 -1.4
696,343 + GFF2023 0.65 +0.3
696,343 + GFF2023 0.65 +0.8
696,343 + GFF2023 0.65 -1.2
696,344 - GFF2023 0.65 +0.1
696,344 - GFF2023 0.65 -0.5
696,344 - GFF2023 0.65 +0.1
696,344 - GFF2023 0.65 -0.5
696,344 - GFF2023 0.65 +0.8
696,349 + GFF2023 0.65 +0.2
696,350 - GFF2023 0.65 +0.4
696,350 - GFF2023 0.65 +0.1
696,350 - GFF2023 0.65 +0.3
696,350 - GFF2023 0.65 +0.5
696,350 - GFF2023 0.65 +0.9
696,350 - GFF2023 0.65 +0.0
696,377 - GFF2023 0.67 +0.4
696,377 - GFF2023 0.67 +0.5
696,377 - GFF2023 0.67 +0.2
696,418 + GFF2023 0.70 -0.1
696,419 - GFF2023 0.70 +0.6
696,419 - GFF2023 0.70 -0.1
696,419 - GFF2023 0.70 -0.3
696,568 + GFF2023 0.80 +0.3
696,635 - GFF2023 0.84 +0.1
696,715 + GFF2023 0.90 -0.1
697,017 + GFF2024 0.14 -0.3
697,017 + GFF2024 0.14 -0.0
697,047 + GFF2024 0.17 +0.2
697,062 + GFF2024 0.18 -0.0
697,062 + GFF2024 0.18 -0.4
697,063 - GFF2024 0.18 +0.2
697,063 - GFF2024 0.18 +0.4
697,146 + GFF2024 0.26 +1.0
697,146 + GFF2024 0.26 +0.1
697,146 + GFF2024 0.26 +0.0
697,146 + GFF2024 0.26 -0.2
697,147 - GFF2024 0.26 +0.2
697,147 - GFF2024 0.26 +0.5
697,147 - GFF2024 0.26 -0.0
697,148 + GFF2024 0.26 -1.5
697,148 + GFF2024 0.26 -0.7
697,149 - GFF2024 0.26 -0.5
697,149 - GFF2024 0.26 -0.1
697,155 + GFF2024 0.27 -1.7
697,155 + GFF2024 0.27 -0.1
697,156 - GFF2024 0.27 -0.3
697,236 + GFF2024 0.34 +0.9
697,237 - GFF2024 0.34 +0.7
697,237 - GFF2024 0.34 -0.1
697,248 + GFF2024 0.35 -0.9
697,248 + GFF2024 0.35 +0.1
697,248 + GFF2024 0.35 -0.5
697,248 + GFF2024 0.35 +0.1
697,248 + GFF2024 0.35 +1.0
697,249 - GFF2024 0.35 -0.3
697,249 - GFF2024 0.35 -0.2
697,249 - GFF2024 0.35 +0.3
697,249 - GFF2024 0.35 -0.5
697,435 - GFF2024 0.53 -0.3
697,815 + GFF2024 0.88 +0.7
697,816 - GFF2024 0.89 -0.0
697,872 + +0.1
697,872 + -1.1
697,872 + -0.0
697,873 - -1.4
697,873 - -0.8
697,873 - +0.1
697,873 - -0.2

Or see this region's nucleotide sequence