Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2002 and GFF2003 overlap by 4 nucleotides GFF2003 and GFF2004 overlap by 13 nucleotides GFF2004 and GFF2005 overlap by 8 nucleotides
GFF2002 - hypothetical protein, at 669,197 to 672,193
GFF2002
GFF2003 - 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, at 672,190 to 673,014
GFF2003
GFF2004 - Caffeine dehydrogenase subunit gamma, at 673,002 to 673,520
GFF2004
GFF2005 - 4-chlorobenzoate--CoA ligase, at 673,513 to 675,057
GFF2005
Position (kb) 673
674 Strain fitness (log2 ratio) -2
-1
0
1 at 672.002 kb on + strand at 672.211 kb on + strand at 672.211 kb on + strand at 672.211 kb on + strand at 672.212 kb on - strand at 672.212 kb on - strand at 672.301 kb on - strand, within GFF2003 at 672.301 kb on - strand, within GFF2003 at 673.443 kb on + strand, within GFF2004 at 673.444 kb on - strand, within GFF2004 at 673.600 kb on + strand at 673.600 kb on + strand at 673.996 kb on + strand, within GFF2005 at 673.997 kb on - strand, within GFF2005 at 673.997 kb on - strand, within GFF2005 at 674.090 kb on - strand, within GFF2005 at 674.254 kb on + strand, within GFF2005 at 674.254 kb on + strand, within GFF2005 at 674.255 kb on - strand, within GFF2005 at 674.255 kb on - strand, within GFF2005 at 674.435 kb on - strand, within GFF2005 at 674.435 kb on - strand, within GFF2005 at 674.435 kb on - strand, within GFF2005 at 674.435 kb on - strand, within GFF2005
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 672,002 + +0.8 672,211 + +1.3 672,211 + +0.6 672,211 + -0.1 672,212 - +0.0 672,212 - -0.3 672,301 - GFF2003 0.13 +0.5 672,301 - GFF2003 0.13 -0.3 673,443 + GFF2004 0.85 +1.1 673,444 - GFF2004 0.85 -0.6 673,600 + +1.5 673,600 + -0.2 673,996 + GFF2005 0.31 +0.9 673,997 - GFF2005 0.31 +0.3 673,997 - GFF2005 0.31 -0.3 674,090 - GFF2005 0.37 +0.4 674,254 + GFF2005 0.48 -2.3 674,254 + GFF2005 0.48 +0.3 674,255 - GFF2005 0.48 -0.1 674,255 - GFF2005 0.48 +0.6 674,435 - GFF2005 0.60 +0.7 674,435 - GFF2005 0.60 -0.3 674,435 - GFF2005 0.60 -0.7 674,435 - GFF2005 0.60 +0.9
Or see this region's nucleotide sequence