Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF197 and GFF198 are separated by 22 nucleotides GFF198 and GFF199 are separated by 62 nucleotides GFF199 and GFF200 are separated by 7 nucleotides
GFF197 - hypothetical protein, at 207,051 to 207,800
GFF197
GFF198 - Glutathione S-transferase GstB, at 207,823 to 208,458
GFF198
GFF199 - Type I secretion system membrane fusion protein PrsE, at 208,521 to 209,864
GFF199
GFF200 - Type I secretion system ATP-binding protein PrsD, at 209,872 to 211,704
GFF200
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2 at 207.742 kb on - strand at 207.742 kb on - strand at 207.742 kb on - strand at 207.777 kb on + strand at 207.777 kb on + strand at 207.777 kb on + strand at 207.882 kb on - strand at 208.007 kb on + strand, within GFF198 at 208.007 kb on + strand, within GFF198 at 208.153 kb on - strand, within GFF198 at 208.244 kb on + strand, within GFF198 at 208.254 kb on + strand, within GFF198 at 208.254 kb on + strand, within GFF198 at 208.254 kb on + strand, within GFF198 at 208.492 kb on + strand at 208.574 kb on - strand at 208.693 kb on + strand, within GFF199 at 208.693 kb on + strand, within GFF199 at 208.694 kb on - strand, within GFF199 at 208.989 kb on + strand, within GFF199 at 208.990 kb on - strand, within GFF199 at 209.150 kb on + strand, within GFF199 at 209.151 kb on - strand, within GFF199 at 209.800 kb on + strand at 210.122 kb on - strand, within GFF200 at 210.122 kb on - strand, within GFF200 at 210.122 kb on - strand, within GFF200 at 210.145 kb on - strand, within GFF200 at 210.315 kb on - strand, within GFF200 at 210.408 kb on + strand, within GFF200 at 210.456 kb on - strand, within GFF200 at 210.456 kb on - strand, within GFF200 at 210.771 kb on - strand, within GFF200
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 207,742 - -0.2 207,742 - -0.5 207,742 - -0.8 207,777 + +1.1 207,777 + +0.1 207,777 + +2.4 207,882 - -0.2 208,007 + GFF198 0.29 +0.1 208,007 + GFF198 0.29 -0.5 208,153 - GFF198 0.52 +0.2 208,244 + GFF198 0.66 +0.8 208,254 + GFF198 0.68 -0.5 208,254 + GFF198 0.68 -0.5 208,254 + GFF198 0.68 -1.2 208,492 + +0.7 208,574 - -0.4 208,693 + GFF199 0.13 +0.4 208,693 + GFF199 0.13 +0.2 208,694 - GFF199 0.13 -0.1 208,989 + GFF199 0.35 -0.0 208,990 - GFF199 0.35 +0.6 209,150 + GFF199 0.47 +0.5 209,151 - GFF199 0.47 -0.9 209,800 + +0.5 210,122 - GFF200 0.14 -0.9 210,122 - GFF200 0.14 -0.6 210,122 - GFF200 0.14 +0.3 210,145 - GFF200 0.15 +0.4 210,315 - GFF200 0.24 -0.4 210,408 + GFF200 0.29 -2.1 210,456 - GFF200 0.32 -0.3 210,456 - GFF200 0.32 +0.2 210,771 - GFF200 0.49 +0.2
Or see this region's nucleotide sequence