Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1962 and GFF1963 are separated by 215 nucleotides GFF1963 and GFF1964 are separated by 145 nucleotides
GFF1962 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 618,325 to 619,998
GFF1962
GFF1963 - Tol-Pal system protein TolB, at 620,214 to 622,913
GFF1963
GFF1964 - HTH-type transcriptional repressor CytR, at 623,059 to 624,162
GFF1964
Position (kb) 620
621
622
623 Strain fitness (log2 ratio) -1
0
1 at 620.074 kb on + strand at 620.074 kb on + strand at 620.101 kb on + strand at 620.177 kb on + strand at 620.177 kb on + strand at 620.497 kb on + strand, within GFF1963 at 620.497 kb on + strand, within GFF1963 at 620.498 kb on - strand, within GFF1963 at 620.498 kb on - strand, within GFF1963 at 620.504 kb on - strand, within GFF1963 at 620.581 kb on - strand, within GFF1963 at 620.677 kb on + strand, within GFF1963 at 620.677 kb on + strand, within GFF1963 at 620.868 kb on + strand, within GFF1963 at 620.868 kb on + strand, within GFF1963 at 620.868 kb on + strand, within GFF1963 at 620.869 kb on - strand, within GFF1963 at 620.869 kb on - strand, within GFF1963 at 620.869 kb on - strand, within GFF1963 at 620.893 kb on + strand, within GFF1963 at 620.911 kb on - strand, within GFF1963 at 620.911 kb on - strand, within GFF1963 at 620.911 kb on - strand, within GFF1963 at 621.039 kb on + strand, within GFF1963 at 621.095 kb on - strand, within GFF1963 at 621.152 kb on + strand, within GFF1963 at 621.152 kb on + strand, within GFF1963 at 621.152 kb on + strand, within GFF1963 at 621.152 kb on + strand, within GFF1963 at 621.152 kb on + strand, within GFF1963 at 621.153 kb on - strand, within GFF1963 at 621.153 kb on - strand, within GFF1963 at 621.478 kb on - strand, within GFF1963 at 621.531 kb on + strand, within GFF1963 at 621.541 kb on - strand, within GFF1963 at 621.542 kb on + strand, within GFF1963 at 621.542 kb on + strand, within GFF1963 at 621.737 kb on + strand, within GFF1963 at 621.784 kb on + strand, within GFF1963 at 621.784 kb on + strand, within GFF1963 at 621.789 kb on + strand, within GFF1963 at 621.790 kb on - strand, within GFF1963 at 621.837 kb on + strand, within GFF1963 at 621.837 kb on + strand, within GFF1963 at 621.902 kb on + strand, within GFF1963 at 621.966 kb on + strand, within GFF1963 at 621.966 kb on + strand, within GFF1963 at 621.966 kb on + strand, within GFF1963 at 622.065 kb on + strand, within GFF1963 at 622.066 kb on - strand, within GFF1963 at 622.112 kb on + strand, within GFF1963 at 622.112 kb on + strand, within GFF1963 at 622.112 kb on + strand, within GFF1963 at 622.137 kb on + strand, within GFF1963 at 622.138 kb on - strand, within GFF1963 at 622.242 kb on + strand, within GFF1963 at 622.242 kb on + strand, within GFF1963 at 622.242 kb on + strand, within GFF1963 at 622.243 kb on - strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.368 kb on + strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.369 kb on - strand, within GFF1963 at 622.640 kb on - strand, within GFF1963 at 623.012 kb on + strand at 623.198 kb on + strand, within GFF1964
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 620,074 + -0.5 620,074 + +0.5 620,101 + -0.4 620,177 + -0.8 620,177 + -1.1 620,497 + GFF1963 0.10 +0.6 620,497 + GFF1963 0.10 +0.4 620,498 - GFF1963 0.11 -0.1 620,498 - GFF1963 0.11 -0.4 620,504 - GFF1963 0.11 -0.5 620,581 - GFF1963 0.14 -0.1 620,677 + GFF1963 0.17 +0.5 620,677 + GFF1963 0.17 -0.1 620,868 + GFF1963 0.24 -0.1 620,868 + GFF1963 0.24 +0.7 620,868 + GFF1963 0.24 +0.4 620,869 - GFF1963 0.24 +0.5 620,869 - GFF1963 0.24 -0.0 620,869 - GFF1963 0.24 +0.1 620,893 + GFF1963 0.25 -0.2 620,911 - GFF1963 0.26 +1.1 620,911 - GFF1963 0.26 -0.5 620,911 - GFF1963 0.26 -0.5 621,039 + GFF1963 0.31 -0.3 621,095 - GFF1963 0.33 +0.8 621,152 + GFF1963 0.35 -0.5 621,152 + GFF1963 0.35 -1.0 621,152 + GFF1963 0.35 +0.0 621,152 + GFF1963 0.35 +0.7 621,152 + GFF1963 0.35 +0.5 621,153 - GFF1963 0.35 -0.2 621,153 - GFF1963 0.35 +0.3 621,478 - GFF1963 0.47 -0.3 621,531 + GFF1963 0.49 -0.5 621,541 - GFF1963 0.49 -0.6 621,542 + GFF1963 0.49 +0.2 621,542 + GFF1963 0.49 +0.8 621,737 + GFF1963 0.56 +1.4 621,784 + GFF1963 0.58 +0.1 621,784 + GFF1963 0.58 +1.0 621,789 + GFF1963 0.58 -0.1 621,790 - GFF1963 0.58 +0.2 621,837 + GFF1963 0.60 -0.0 621,837 + GFF1963 0.60 +0.2 621,902 + GFF1963 0.63 +0.1 621,966 + GFF1963 0.65 +0.3 621,966 + GFF1963 0.65 -0.6 621,966 + GFF1963 0.65 +0.1 622,065 + GFF1963 0.69 -0.1 622,066 - GFF1963 0.69 -0.2 622,112 + GFF1963 0.70 -0.8 622,112 + GFF1963 0.70 +0.1 622,112 + GFF1963 0.70 +0.3 622,137 + GFF1963 0.71 -0.3 622,138 - GFF1963 0.71 -0.5 622,242 + GFF1963 0.75 -1.3 622,242 + GFF1963 0.75 +0.8 622,242 + GFF1963 0.75 +0.1 622,243 - GFF1963 0.75 +0.3 622,368 + GFF1963 0.80 -0.5 622,368 + GFF1963 0.80 -0.2 622,368 + GFF1963 0.80 -0.1 622,368 + GFF1963 0.80 -0.1 622,368 + GFF1963 0.80 +1.7 622,368 + GFF1963 0.80 -0.3 622,368 + GFF1963 0.80 -0.7 622,368 + GFF1963 0.80 -0.1 622,369 - GFF1963 0.80 +1.1 622,369 - GFF1963 0.80 +0.2 622,369 - GFF1963 0.80 +0.4 622,369 - GFF1963 0.80 +0.3 622,369 - GFF1963 0.80 +0.4 622,640 - GFF1963 0.90 +0.3 623,012 + -0.1 623,198 + GFF1964 0.13 -0.6
Or see this region's nucleotide sequence