Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1944 and GFF1945 are separated by 707 nucleotides GFF1945 and GFF1946 are separated by 30 nucleotides
GFF1944 - hypothetical protein, at 598,289 to 598,696
GFF1944
GFF1945 - ATP-dependent RecD-like DNA helicase, at 599,404 to 600,717
GFF1945
GFF1946 - Ribokinase, at 600,748 to 601,746
GFF1946
Position (kb) 599
600
601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 598.416 kb on + strand, within GFF1944 at 598.416 kb on + strand, within GFF1944 at 598.416 kb on + strand, within GFF1944 at 598.417 kb on - strand, within GFF1944 at 598.417 kb on - strand, within GFF1944 at 598.547 kb on + strand, within GFF1944 at 598.642 kb on + strand, within GFF1944 at 598.644 kb on + strand, within GFF1944 at 598.644 kb on + strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.645 kb on - strand, within GFF1944 at 598.654 kb on + strand, within GFF1944 at 598.655 kb on - strand, within GFF1944 at 598.750 kb on - strand at 598.834 kb on + strand at 598.838 kb on + strand at 598.838 kb on + strand at 598.839 kb on - strand at 598.843 kb on - strand at 598.872 kb on + strand at 598.874 kb on + strand at 598.875 kb on - strand at 598.875 kb on - strand at 598.884 kb on + strand at 598.924 kb on + strand at 598.925 kb on - strand at 598.931 kb on - strand at 598.961 kb on + strand at 598.969 kb on + strand at 598.970 kb on - strand at 598.970 kb on - strand at 598.999 kb on + strand at 599.000 kb on - strand at 599.000 kb on - strand at 599.255 kb on - strand at 599.268 kb on + strand at 599.269 kb on - strand at 599.277 kb on + strand at 599.278 kb on - strand at 599.395 kb on + strand at 599.395 kb on + strand at 599.395 kb on + strand at 599.396 kb on - strand at 599.522 kb on + strand at 599.522 kb on + strand at 599.522 kb on + strand at 599.522 kb on + strand at 599.522 kb on + strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.523 kb on - strand at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.639 kb on + strand, within GFF1945 at 599.640 kb on - strand, within GFF1945 at 599.640 kb on - strand, within GFF1945 at 599.969 kb on + strand, within GFF1945 at 599.969 kb on + strand, within GFF1945 at 599.970 kb on - strand, within GFF1945 at 600.206 kb on + strand, within GFF1945 at 600.239 kb on + strand, within GFF1945 at 600.240 kb on - strand, within GFF1945 at 600.756 kb on + strand at 600.756 kb on + strand at 600.757 kb on - strand at 601.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 598,416 + GFF1944 0.31 +0.3 598,416 + GFF1944 0.31 -0.4 598,416 + GFF1944 0.31 +0.4 598,417 - GFF1944 0.31 +0.6 598,417 - GFF1944 0.31 -0.0 598,547 + GFF1944 0.63 +0.6 598,642 + GFF1944 0.87 -0.5 598,644 + GFF1944 0.87 -0.4 598,644 + GFF1944 0.87 -0.4 598,645 - GFF1944 0.87 -0.0 598,645 - GFF1944 0.87 +0.1 598,645 - GFF1944 0.87 -1.7 598,654 + GFF1944 0.89 -0.0 598,655 - GFF1944 0.90 +0.6 598,750 - -0.3 598,834 + -0.7 598,838 + -0.4 598,838 + +0.0 598,839 - +0.6 598,843 - +0.1 598,872 + -0.1 598,874 + -0.0 598,875 - +0.4 598,875 - -0.1 598,884 + +0.5 598,924 + +2.6 598,925 - +0.5 598,931 - +0.1 598,961 + +0.4 598,969 + +0.9 598,970 - +0.0 598,970 - +0.0 598,999 + -0.5 599,000 - +1.3 599,000 - +0.5 599,255 - -0.5 599,268 + -0.3 599,269 - +0.6 599,277 + +0.3 599,278 - +1.7 599,395 + +1.6 599,395 + -0.0 599,395 + +0.2 599,396 - +0.5 599,522 + +0.1 599,522 + +0.1 599,522 + -1.2 599,522 + +0.5 599,522 + -0.9 599,523 - +0.5 599,523 - -1.3 599,523 - -0.1 599,523 - -0.1 599,523 - -0.2 599,523 - +0.9 599,639 + GFF1945 0.18 -0.6 599,639 + GFF1945 0.18 -1.1 599,639 + GFF1945 0.18 -0.1 599,639 + GFF1945 0.18 -2.3 599,639 + GFF1945 0.18 -0.6 599,639 + GFF1945 0.18 -0.0 599,640 - GFF1945 0.18 -0.7 599,640 - GFF1945 0.18 -0.6 599,969 + GFF1945 0.43 +0.3 599,969 + GFF1945 0.43 +0.7 599,970 - GFF1945 0.43 -0.4 600,206 + GFF1945 0.61 +0.5 600,239 + GFF1945 0.64 +1.1 600,240 - GFF1945 0.64 -0.3 600,756 + -0.6 600,756 + +0.2 600,757 - +0.2 601,677 - +0.0
Or see this region's nucleotide sequence