Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1926 and GFF1927 are separated by 342 nucleotides GFF1927 and GFF1928 are separated by 134 nucleotides GFF1928 and GFF1929 are separated by 142 nucleotides GFF1929 and GFF1930 overlap by 4 nucleotides
GFF1926 - hypothetical protein, at 583,595 to 584,095
GFF1926
GFF1927 - Ubiquinone biosynthesis accessory factor UbiK, at 584,438 to 584,752
GFF1927
GFF1928 - hypothetical protein, at 584,887 to 585,366
GFF1928
GFF1929 - Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase, at 585,509 to 586,327
GFF1929
GFF1930 - hypothetical protein, at 586,324 to 587,442
GFF1930
Position (kb) 584
585
586 Strain fitness (log2 ratio) -1
0
1 at 584.280 kb on + strand at 584.281 kb on - strand at 584.291 kb on + strand at 584.329 kb on + strand at 584.330 kb on - strand at 584.903 kb on + strand at 584.903 kb on + strand at 584.903 kb on + strand at 584.904 kb on - strand at 585.002 kb on + strand, within GFF1928 at 585.003 kb on - strand, within GFF1928 at 585.089 kb on + strand, within GFF1928 at 585.090 kb on - strand, within GFF1928
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 584,280 + +0.2 584,281 - -0.3 584,291 + +0.7 584,329 + +0.3 584,330 - -0.3 584,903 + +0.0 584,903 + +0.0 584,903 + -1.2 584,904 - +0.8 585,002 + GFF1928 0.24 +1.7 585,003 - GFF1928 0.24 -1.4 585,089 + GFF1928 0.42 +1.1 585,090 - GFF1928 0.42 +0.5
Or see this region's nucleotide sequence