Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1907 and GFF1908 overlap by 11 nucleotides GFF1908 and GFF1909 overlap by 1 nucleotides GFF1909 and GFF1910 are separated by 279 nucleotides
GFF1907 - hypothetical protein, at 565,781 to 566,527
GFF1907
GFF1908 - hypothetical protein, at 566,517 to 567,350
GFF1908
GFF1909 - hypothetical protein, at 567,350 to 569,401
GFF1909
GFF1910 - putative sulfoacetate transporter SauU, at 569,681 to 570,889
GFF1910
Position (kb) 567
568
569
570 Strain fitness (log2 ratio) -2
-1
0
1 at 566.353 kb on - strand, within GFF1907 at 566.353 kb on - strand, within GFF1907 at 566.481 kb on + strand at 566.481 kb on + strand at 566.482 kb on - strand at 566.582 kb on + strand at 566.583 kb on - strand at 566.740 kb on + strand, within GFF1908 at 566.931 kb on - strand, within GFF1908 at 566.967 kb on - strand, within GFF1908 at 567.235 kb on - strand, within GFF1908 at 567.235 kb on - strand, within GFF1908 at 567.633 kb on - strand, within GFF1909 at 567.653 kb on + strand, within GFF1909 at 567.653 kb on + strand, within GFF1909 at 567.653 kb on + strand, within GFF1909 at 567.716 kb on + strand, within GFF1909 at 567.717 kb on - strand, within GFF1909 at 567.717 kb on - strand, within GFF1909 at 568.040 kb on + strand, within GFF1909 at 568.040 kb on + strand, within GFF1909 at 568.041 kb on - strand, within GFF1909 at 568.041 kb on - strand, within GFF1909 at 568.041 kb on - strand, within GFF1909 at 568.218 kb on - strand, within GFF1909 at 568.772 kb on + strand, within GFF1909 at 568.772 kb on + strand, within GFF1909 at 568.772 kb on + strand, within GFF1909 at 568.773 kb on - strand, within GFF1909 at 568.773 kb on - strand, within GFF1909 at 568.779 kb on - strand, within GFF1909 at 568.862 kb on - strand, within GFF1909 at 568.876 kb on - strand, within GFF1909 at 568.876 kb on - strand, within GFF1909 at 568.983 kb on - strand, within GFF1909 at 568.983 kb on - strand, within GFF1909 at 568.983 kb on - strand, within GFF1909 at 569.018 kb on + strand, within GFF1909 at 569.018 kb on + strand, within GFF1909 at 569.018 kb on + strand, within GFF1909 at 569.019 kb on - strand, within GFF1909 at 569.019 kb on - strand, within GFF1909 at 569.019 kb on - strand, within GFF1909 at 569.019 kb on - strand, within GFF1909 at 569.019 kb on - strand, within GFF1909 at 569.126 kb on + strand, within GFF1909 at 569.174 kb on + strand, within GFF1909 at 569.175 kb on - strand, within GFF1909 at 569.176 kb on + strand, within GFF1909 at 569.177 kb on - strand, within GFF1909 at 569.177 kb on - strand, within GFF1909 at 569.366 kb on + strand at 569.366 kb on + strand at 569.367 kb on - strand at 569.454 kb on + strand at 569.454 kb on + strand at 569.454 kb on + strand at 569.455 kb on - strand at 569.861 kb on + strand, within GFF1910 at 569.862 kb on - strand, within GFF1910 at 569.862 kb on - strand, within GFF1910 at 569.862 kb on - strand, within GFF1910 at 569.862 kb on - strand, within GFF1910 at 569.990 kb on + strand, within GFF1910 at 569.990 kb on + strand, within GFF1910 at 569.990 kb on + strand, within GFF1910 at 569.991 kb on - strand, within GFF1910 at 569.991 kb on - strand, within GFF1910 at 570.041 kb on + strand, within GFF1910 at 570.157 kb on - strand, within GFF1910 at 570.362 kb on + strand, within GFF1910 at 570.363 kb on - strand, within GFF1910 at 570.363 kb on - strand, within GFF1910
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 566,353 - GFF1907 0.77 -1.0 566,353 - GFF1907 0.77 -0.2 566,481 + +0.2 566,481 + +0.3 566,482 - -0.2 566,582 + -0.1 566,583 - -0.6 566,740 + GFF1908 0.27 +0.1 566,931 - GFF1908 0.50 +0.2 566,967 - GFF1908 0.54 +0.5 567,235 - GFF1908 0.86 -0.4 567,235 - GFF1908 0.86 -0.5 567,633 - GFF1909 0.14 -0.2 567,653 + GFF1909 0.15 -1.4 567,653 + GFF1909 0.15 -1.6 567,653 + GFF1909 0.15 -0.2 567,716 + GFF1909 0.18 -0.2 567,717 - GFF1909 0.18 +0.3 567,717 - GFF1909 0.18 -1.1 568,040 + GFF1909 0.34 +0.0 568,040 + GFF1909 0.34 -2.0 568,041 - GFF1909 0.34 -0.3 568,041 - GFF1909 0.34 +0.4 568,041 - GFF1909 0.34 +0.3 568,218 - GFF1909 0.42 +0.2 568,772 + GFF1909 0.69 -1.8 568,772 + GFF1909 0.69 -0.3 568,772 + GFF1909 0.69 -0.7 568,773 - GFF1909 0.69 -0.5 568,773 - GFF1909 0.69 -1.3 568,779 - GFF1909 0.70 -1.4 568,862 - GFF1909 0.74 -0.5 568,876 - GFF1909 0.74 -0.7 568,876 - GFF1909 0.74 -0.6 568,983 - GFF1909 0.80 -0.2 568,983 - GFF1909 0.80 -0.3 568,983 - GFF1909 0.80 -0.7 569,018 + GFF1909 0.81 -1.0 569,018 + GFF1909 0.81 -0.8 569,018 + GFF1909 0.81 -0.6 569,019 - GFF1909 0.81 -0.5 569,019 - GFF1909 0.81 -0.7 569,019 - GFF1909 0.81 -0.3 569,019 - GFF1909 0.81 -0.7 569,019 - GFF1909 0.81 -1.1 569,126 + GFF1909 0.87 -0.4 569,174 + GFF1909 0.89 -1.2 569,175 - GFF1909 0.89 -0.4 569,176 + GFF1909 0.89 -0.7 569,177 - GFF1909 0.89 -0.3 569,177 - GFF1909 0.89 -0.7 569,366 + -1.5 569,366 + -0.8 569,367 - -1.8 569,454 + +0.1 569,454 + -0.0 569,454 + -0.3 569,455 - +1.7 569,861 + GFF1910 0.15 +0.5 569,862 - GFF1910 0.15 +0.1 569,862 - GFF1910 0.15 +0.8 569,862 - GFF1910 0.15 +0.4 569,862 - GFF1910 0.15 +0.1 569,990 + GFF1910 0.26 +1.0 569,990 + GFF1910 0.26 +0.0 569,990 + GFF1910 0.26 -0.0 569,991 - GFF1910 0.26 +0.5 569,991 - GFF1910 0.26 -0.2 570,041 + GFF1910 0.30 -0.2 570,157 - GFF1910 0.39 +0.9 570,362 + GFF1910 0.56 -0.2 570,363 - GFF1910 0.56 +0.6 570,363 - GFF1910 0.56 -0.1
Or see this region's nucleotide sequence