Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1905 and GFF1906 overlap by 4 nucleotides GFF1906 and GFF1907 are separated by 209 nucleotides GFF1907 and GFF1908 overlap by 11 nucleotides GFF1908 and GFF1909 overlap by 1 nucleotides
GFF1905 - sugar efflux transporter, at 562,921 to 564,906
GFF1905
GFF1906 - hypothetical protein, at 564,903 to 565,571
GFF1906
GFF1907 - hypothetical protein, at 565,781 to 566,527
GFF1907
GFF1908 - hypothetical protein, at 566,517 to 567,350
GFF1908
GFF1909 - hypothetical protein, at 567,350 to 569,401
GFF1909
Position (kb) 565
566
567 Strain fitness (log2 ratio) -2
-1
0
1 at 565.165 kb on + strand, within GFF1906 at 565.165 kb on + strand, within GFF1906 at 565.166 kb on - strand, within GFF1906 at 565.166 kb on - strand, within GFF1906 at 565.201 kb on + strand, within GFF1906 at 565.248 kb on - strand, within GFF1906 at 565.279 kb on + strand, within GFF1906 at 565.280 kb on - strand, within GFF1906 at 565.280 kb on - strand, within GFF1906 at 565.476 kb on + strand, within GFF1906 at 565.634 kb on - strand at 565.976 kb on - strand, within GFF1907 at 566.069 kb on + strand, within GFF1907 at 566.069 kb on + strand, within GFF1907 at 566.069 kb on + strand, within GFF1907 at 566.069 kb on + strand, within GFF1907 at 566.070 kb on - strand, within GFF1907 at 566.327 kb on - strand, within GFF1907 at 566.353 kb on - strand, within GFF1907 at 566.353 kb on - strand, within GFF1907 at 566.481 kb on + strand at 566.481 kb on + strand at 566.482 kb on - strand at 566.582 kb on + strand at 566.583 kb on - strand at 566.740 kb on + strand, within GFF1908 at 566.931 kb on - strand, within GFF1908 at 566.967 kb on - strand, within GFF1908 at 567.235 kb on - strand, within GFF1908 at 567.235 kb on - strand, within GFF1908
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 565,165 + GFF1906 0.39 -0.6 565,165 + GFF1906 0.39 +0.5 565,166 - GFF1906 0.39 -2.1 565,166 - GFF1906 0.39 +0.4 565,201 + GFF1906 0.45 +0.6 565,248 - GFF1906 0.52 -0.3 565,279 + GFF1906 0.56 +0.7 565,280 - GFF1906 0.56 +0.6 565,280 - GFF1906 0.56 +0.2 565,476 + GFF1906 0.86 -0.8 565,634 - -0.6 565,976 - GFF1907 0.26 -1.0 566,069 + GFF1907 0.39 -0.8 566,069 + GFF1907 0.39 -0.3 566,069 + GFF1907 0.39 -0.6 566,069 + GFF1907 0.39 -0.6 566,070 - GFF1907 0.39 -0.3 566,327 - GFF1907 0.73 -0.1 566,353 - GFF1907 0.77 -1.0 566,353 - GFF1907 0.77 -0.2 566,481 + +0.2 566,481 + +0.3 566,482 - -0.2 566,582 + -0.1 566,583 - -0.6 566,740 + GFF1908 0.27 +0.1 566,931 - GFF1908 0.50 +0.2 566,967 - GFF1908 0.54 +0.5 567,235 - GFF1908 0.86 -0.4 567,235 - GFF1908 0.86 -0.5
Or see this region's nucleotide sequence