Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1896 and GFF1897 are separated by 147 nucleotides GFF1897 and GFF1898 are separated by 191 nucleotides GFF1898 and GFF1899 are separated by 40 nucleotides GFF1899 and GFF1900 overlap by 17 nucleotides
GFF1896 - hypothetical protein, at 555,734 to 556,168
GFF1896
GFF1897 - Elongation factor P, at 556,316 to 556,885
GFF1897
GFF1898 - Elongation factor P--(R)-beta-lysine ligase, at 557,077 to 558,150
GFF1898
GFF1899 - Putative anti-sigma factor antagonist BtrV, at 558,191 to 558,493
GFF1899
GFF1900 - hypothetical protein, at 558,477 to 560,126
GFF1900
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 556.081 kb on - strand, within GFF1896 at 556.125 kb on + strand at 556.126 kb on - strand at 556.174 kb on + strand at 556.175 kb on - strand at 556.175 kb on - strand at 556.175 kb on - strand at 557.072 kb on - strand at 557.072 kb on - strand at 557.072 kb on - strand at 557.072 kb on - strand at 557.461 kb on + strand, within GFF1898 at 557.819 kb on - strand, within GFF1898 at 557.890 kb on + strand, within GFF1898 at 557.890 kb on + strand, within GFF1898 at 557.891 kb on - strand, within GFF1898 at 557.992 kb on + strand, within GFF1898 at 557.993 kb on - strand, within GFF1898 at 558.004 kb on + strand, within GFF1898 at 558.020 kb on - strand, within GFF1898 at 558.148 kb on + strand at 558.148 kb on + strand at 558.149 kb on - strand at 558.149 kb on - strand at 558.149 kb on - strand at 558.339 kb on + strand, within GFF1899 at 558.340 kb on - strand, within GFF1899 at 558.340 kb on - strand, within GFF1899 at 558.501 kb on + strand at 558.546 kb on - strand at 558.546 kb on - strand at 558.700 kb on + strand, within GFF1900
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 556,081 - GFF1896 0.80 -1.3 556,125 + -1.4 556,126 - -0.1 556,174 + -0.0 556,175 - -0.7 556,175 - +0.4 556,175 - -1.1 557,072 - -0.9 557,072 - +1.5 557,072 - -0.4 557,072 - -0.7 557,461 + GFF1898 0.36 -0.3 557,819 - GFF1898 0.69 +0.0 557,890 + GFF1898 0.76 +0.5 557,890 + GFF1898 0.76 -1.5 557,891 - GFF1898 0.76 -0.2 557,992 + GFF1898 0.85 -0.6 557,993 - GFF1898 0.85 -0.4 558,004 + GFF1898 0.86 -3.0 558,020 - GFF1898 0.88 -1.3 558,148 + +0.4 558,148 + +0.1 558,149 - -0.6 558,149 - -0.2 558,149 - +0.5 558,339 + GFF1899 0.49 -1.2 558,340 - GFF1899 0.49 -0.8 558,340 - GFF1899 0.49 +0.4 558,501 + -0.7 558,546 - +0.8 558,546 - +0.1 558,700 + GFF1900 0.14 -0.0
Or see this region's nucleotide sequence