Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1890 and GFF1891 are separated by 87 nucleotides GFF1891 and GFF1892 overlap by 4 nucleotides GFF1892 and GFF1893 overlap by 1 nucleotides
GFF1890 - hypothetical protein, at 550,073 to 551,038
GFF1890
GFF1891 - hypothetical protein, at 551,126 to 552,346
GFF1891
GFF1892 - dITP/XTP pyrophosphatase, at 552,343 to 552,975
GFF1892
GFF1893 - Ribonuclease PH, at 552,975 to 553,712
GFF1893
Position (kb) 551
552
553 Strain fitness (log2 ratio) -1
0
1 at 550.254 kb on - strand, within GFF1890 at 550.343 kb on + strand, within GFF1890 at 550.344 kb on - strand, within GFF1890 at 550.443 kb on + strand, within GFF1890 at 550.443 kb on + strand, within GFF1890 at 550.444 kb on - strand, within GFF1890 at 550.444 kb on - strand, within GFF1890 at 550.498 kb on + strand, within GFF1890 at 550.500 kb on + strand, within GFF1890 at 550.500 kb on + strand, within GFF1890 at 550.501 kb on - strand, within GFF1890 at 550.593 kb on + strand, within GFF1890 at 550.593 kb on + strand, within GFF1890 at 550.665 kb on + strand, within GFF1890 at 550.692 kb on - strand, within GFF1890 at 550.694 kb on + strand, within GFF1890 at 550.694 kb on + strand, within GFF1890 at 551.038 kb on + strand at 551.083 kb on - strand at 551.083 kb on - strand at 551.484 kb on + strand, within GFF1891 at 551.485 kb on - strand, within GFF1891 at 551.778 kb on + strand, within GFF1891 at 551.779 kb on - strand, within GFF1891 at 552.070 kb on + strand, within GFF1891 at 552.157 kb on - strand, within GFF1891 at 552.157 kb on - strand, within GFF1891 at 552.243 kb on + strand at 552.243 kb on + strand at 553.190 kb on - strand, within GFF1893
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 550,254 - GFF1890 0.19 +1.3 550,343 + GFF1890 0.28 +0.8 550,344 - GFF1890 0.28 -0.1 550,443 + GFF1890 0.38 +0.8 550,443 + GFF1890 0.38 +0.3 550,444 - GFF1890 0.38 +0.1 550,444 - GFF1890 0.38 +1.5 550,498 + GFF1890 0.44 -0.2 550,500 + GFF1890 0.44 -0.1 550,500 + GFF1890 0.44 +0.8 550,501 - GFF1890 0.44 +0.3 550,593 + GFF1890 0.54 -0.0 550,593 + GFF1890 0.54 -0.0 550,665 + GFF1890 0.61 +0.4 550,692 - GFF1890 0.64 +0.1 550,694 + GFF1890 0.64 -0.3 550,694 + GFF1890 0.64 -0.1 551,038 + +0.3 551,083 - -0.8 551,083 - +0.1 551,484 + GFF1891 0.29 +0.3 551,485 - GFF1891 0.29 -0.7 551,778 + GFF1891 0.53 +0.2 551,779 - GFF1891 0.53 -0.1 552,070 + GFF1891 0.77 +0.2 552,157 - GFF1891 0.84 -0.1 552,157 - GFF1891 0.84 +0.2 552,243 + +0.1 552,243 + +0.5 553,190 - GFF1893 0.29 +1.2
Or see this region's nucleotide sequence