Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1821 and GFF1822 are separated by 140 nucleotides GFF1822 and GFF1823 are separated by 385 nucleotides
GFF1821 - Hydrogen peroxide-inducible genes activator, at 477,240 to 478,160
GFF1821
GFF1822 - hypothetical protein, at 478,301 to 479,818
GFF1822
GFF1823 - hypothetical protein, at 480,204 to 480,920
GFF1823
Position (kb) 478
479
480 Strain fitness (log2 ratio) -1
0
1 at 477.561 kb on + strand, within GFF1821 at 477.561 kb on + strand, within GFF1821 at 477.561 kb on + strand, within GFF1821 at 477.616 kb on + strand, within GFF1821 at 477.616 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.618 kb on + strand, within GFF1821 at 477.619 kb on - strand, within GFF1821 at 477.619 kb on - strand, within GFF1821 at 477.747 kb on + strand, within GFF1821 at 477.748 kb on - strand, within GFF1821 at 477.906 kb on + strand, within GFF1821 at 477.906 kb on + strand, within GFF1821 at 477.907 kb on - strand, within GFF1821 at 477.981 kb on + strand, within GFF1821 at 478.100 kb on - strand at 478.289 kb on + strand at 478.289 kb on + strand at 478.987 kb on + strand, within GFF1822 at 478.987 kb on + strand, within GFF1822 at 478.987 kb on + strand, within GFF1822 at 478.988 kb on - strand, within GFF1822 at 478.988 kb on - strand, within GFF1822 at 479.067 kb on + strand, within GFF1822 at 479.067 kb on + strand, within GFF1822 at 479.067 kb on + strand, within GFF1822 at 479.292 kb on + strand, within GFF1822 at 479.424 kb on + strand, within GFF1822 at 479.425 kb on - strand, within GFF1822 at 479.425 kb on - strand, within GFF1822 at 480.031 kb on - strand at 480.031 kb on - strand at 480.041 kb on + strand at 480.106 kb on - strand at 480.173 kb on + strand at 480.174 kb on - strand at 480.393 kb on + strand, within GFF1823 at 480.393 kb on + strand, within GFF1823 at 480.393 kb on + strand, within GFF1823 at 480.394 kb on - strand, within GFF1823 at 480.394 kb on - strand, within GFF1823 at 480.537 kb on + strand, within GFF1823 at 480.753 kb on + strand, within GFF1823 at 480.754 kb on - strand, within GFF1823
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 477,561 + GFF1821 0.35 -0.8 477,561 + GFF1821 0.35 +0.7 477,561 + GFF1821 0.35 +1.2 477,616 + GFF1821 0.41 -0.3 477,616 + GFF1821 0.41 +0.1 477,618 + GFF1821 0.41 +0.6 477,618 + GFF1821 0.41 -0.5 477,618 + GFF1821 0.41 -0.1 477,618 + GFF1821 0.41 -0.0 477,618 + GFF1821 0.41 -0.2 477,619 - GFF1821 0.41 -0.9 477,619 - GFF1821 0.41 +0.5 477,747 + GFF1821 0.55 +0.2 477,748 - GFF1821 0.55 -0.1 477,906 + GFF1821 0.72 -1.3 477,906 + GFF1821 0.72 -0.3 477,907 - GFF1821 0.72 +0.4 477,981 + GFF1821 0.80 -0.5 478,100 - -0.4 478,289 + +0.0 478,289 + +0.3 478,987 + GFF1822 0.45 +0.3 478,987 + GFF1822 0.45 +0.9 478,987 + GFF1822 0.45 -0.1 478,988 - GFF1822 0.45 -0.7 478,988 - GFF1822 0.45 +0.1 479,067 + GFF1822 0.50 -1.7 479,067 + GFF1822 0.50 -0.3 479,067 + GFF1822 0.50 +0.0 479,292 + GFF1822 0.65 -0.1 479,424 + GFF1822 0.74 +0.0 479,425 - GFF1822 0.74 +0.3 479,425 - GFF1822 0.74 +0.1 480,031 - -0.0 480,031 - +0.2 480,041 + -0.8 480,106 - +0.4 480,173 + -0.2 480,174 - -0.0 480,393 + GFF1823 0.26 +0.2 480,393 + GFF1823 0.26 +0.6 480,393 + GFF1823 0.26 +1.0 480,394 - GFF1823 0.26 -0.1 480,394 - GFF1823 0.26 +0.2 480,537 + GFF1823 0.46 -0.0 480,753 + GFF1823 0.77 +0.5 480,754 - GFF1823 0.77 +0.6
Or see this region's nucleotide sequence