Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1802 and GFF1803 are separated by 305 nucleotides GFF1803 and GFF1804 are separated by 4 nucleotides GFF1804 and GFF1805 are separated by 14 nucleotides
GFF1802 - Uric acid transporter UacT, at 454,627 to 456,018
GFF1802
GFF1803 - 5-hydroxyisourate hydrolase, at 456,324 to 456,674
GFF1803
GFF1804 - hypothetical protein, at 456,679 to 458,157
GFF1804
GFF1805 - N-carbamoyl-L-amino acid hydrolase, at 458,172 to 459,440
GFF1805
Position (kb) 456
457
458
459 Strain fitness (log2 ratio) -1
0
1
2 at 455.933 kb on + strand at 455.933 kb on + strand at 455.934 kb on - strand at 456.071 kb on + strand at 456.396 kb on + strand, within GFF1803 at 456.507 kb on + strand, within GFF1803 at 456.507 kb on + strand, within GFF1803 at 456.507 kb on + strand, within GFF1803 at 456.608 kb on - strand, within GFF1803 at 456.618 kb on + strand, within GFF1803 at 456.619 kb on - strand, within GFF1803 at 456.651 kb on + strand at 456.651 kb on + strand at 456.652 kb on - strand at 456.652 kb on - strand at 456.705 kb on + strand at 456.766 kb on + strand at 456.835 kb on + strand, within GFF1804 at 456.836 kb on - strand, within GFF1804 at 457.030 kb on + strand, within GFF1804 at 457.031 kb on - strand, within GFF1804 at 457.129 kb on + strand, within GFF1804 at 457.129 kb on + strand, within GFF1804 at 457.188 kb on + strand, within GFF1804 at 457.188 kb on + strand, within GFF1804 at 457.189 kb on - strand, within GFF1804 at 457.297 kb on + strand, within GFF1804 at 457.324 kb on + strand, within GFF1804 at 457.324 kb on + strand, within GFF1804 at 457.325 kb on - strand, within GFF1804 at 457.325 kb on - strand, within GFF1804 at 457.325 kb on - strand, within GFF1804 at 457.456 kb on + strand, within GFF1804 at 457.558 kb on + strand, within GFF1804 at 457.558 kb on + strand, within GFF1804 at 457.646 kb on - strand, within GFF1804 at 457.657 kb on + strand, within GFF1804 at 457.657 kb on + strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.658 kb on - strand, within GFF1804 at 457.975 kb on + strand, within GFF1804 at 457.976 kb on - strand, within GFF1804 at 457.976 kb on - strand, within GFF1804
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 455,933 + +0.4 455,933 + -1.2 455,934 - -0.2 456,071 + +0.0 456,396 + GFF1803 0.21 +1.9 456,507 + GFF1803 0.52 +1.5 456,507 + GFF1803 0.52 +0.1 456,507 + GFF1803 0.52 -0.4 456,608 - GFF1803 0.81 -0.8 456,618 + GFF1803 0.84 +0.3 456,619 - GFF1803 0.84 -0.2 456,651 + +0.3 456,651 + -1.2 456,652 - +0.7 456,652 - -1.2 456,705 + +0.4 456,766 + +0.1 456,835 + GFF1804 0.11 -0.2 456,836 - GFF1804 0.11 -1.4 457,030 + GFF1804 0.24 +0.1 457,031 - GFF1804 0.24 +0.6 457,129 + GFF1804 0.30 -0.2 457,129 + GFF1804 0.30 -0.7 457,188 + GFF1804 0.34 -0.5 457,188 + GFF1804 0.34 +0.4 457,189 - GFF1804 0.34 -0.6 457,297 + GFF1804 0.42 +1.8 457,324 + GFF1804 0.44 -0.5 457,324 + GFF1804 0.44 +0.4 457,325 - GFF1804 0.44 -0.1 457,325 - GFF1804 0.44 +0.4 457,325 - GFF1804 0.44 +0.2 457,456 + GFF1804 0.53 +0.9 457,558 + GFF1804 0.59 +0.6 457,558 + GFF1804 0.59 +0.8 457,646 - GFF1804 0.65 +0.9 457,657 + GFF1804 0.66 -0.1 457,657 + GFF1804 0.66 +0.2 457,658 - GFF1804 0.66 +0.3 457,658 - GFF1804 0.66 +0.5 457,658 - GFF1804 0.66 +0.6 457,658 - GFF1804 0.66 -0.6 457,658 - GFF1804 0.66 +0.9 457,975 + GFF1804 0.88 +0.2 457,976 - GFF1804 0.88 -0.3 457,976 - GFF1804 0.88 -0.6
Or see this region's nucleotide sequence