Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1795 and GFF1796 are separated by 122 nucleotides GFF1796 and GFF1797 are separated by 159 nucleotides GFF1797 and GFF1798 are separated by 69 nucleotides GFF1798 and GFF1799 are separated by 72 nucleotides
GFF1795 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 444,358 to 447,162
GFF1795
GFF1796 - hypothetical protein, at 447,285 to 447,755
GFF1796
GFF1797 - Biosynthetic peptidoglycan transglycosylase, at 447,915 to 450,140
GFF1797
GFF1798 - putative GTP-binding protein EngB, at 450,210 to 450,866
GFF1798
GFF1799 - Acetylornithine deacetylase, at 450,939 to 452,165
GFF1799
Position (kb) 447
448
449
450
451 Strain fitness (log2 ratio) -1
0
1
2 at 447.274 kb on - strand at 447.274 kb on - strand at 447.708 kb on + strand, within GFF1796 at 447.736 kb on - strand at 447.897 kb on + strand at 448.431 kb on + strand, within GFF1797 at 448.647 kb on + strand, within GFF1797 at 448.941 kb on + strand, within GFF1797 at 448.941 kb on + strand, within GFF1797 at 448.942 kb on - strand, within GFF1797 at 449.084 kb on - strand, within GFF1797 at 449.094 kb on + strand, within GFF1797 at 449.170 kb on - strand, within GFF1797 at 449.184 kb on + strand, within GFF1797 at 449.184 kb on + strand, within GFF1797 at 449.185 kb on - strand, within GFF1797 at 449.185 kb on - strand, within GFF1797 at 449.242 kb on - strand, within GFF1797 at 449.242 kb on - strand, within GFF1797 at 449.536 kb on - strand, within GFF1797 at 449.537 kb on + strand, within GFF1797 at 449.537 kb on + strand, within GFF1797 at 449.538 kb on - strand, within GFF1797 at 449.661 kb on + strand, within GFF1797 at 449.662 kb on - strand, within GFF1797 at 449.796 kb on + strand, within GFF1797 at 449.808 kb on + strand, within GFF1797 at 449.809 kb on - strand, within GFF1797 at 449.809 kb on - strand, within GFF1797 at 450.000 kb on + strand at 450.196 kb on + strand at 450.196 kb on + strand at 450.201 kb on + strand at 450.963 kb on - strand at 451.063 kb on + strand, within GFF1799 at 451.063 kb on + strand, within GFF1799 at 451.064 kb on - strand, within GFF1799 at 451.094 kb on - strand, within GFF1799 at 451.111 kb on + strand, within GFF1799 at 451.112 kb on - strand, within GFF1799
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 447,274 - -0.9 447,274 - -0.3 447,708 + GFF1796 0.90 -0.2 447,736 - -0.6 447,897 + -1.2 448,431 + GFF1797 0.23 -1.1 448,647 + GFF1797 0.33 -1.3 448,941 + GFF1797 0.46 -0.2 448,941 + GFF1797 0.46 -1.6 448,942 - GFF1797 0.46 -1.0 449,084 - GFF1797 0.53 -0.6 449,094 + GFF1797 0.53 -1.4 449,170 - GFF1797 0.56 -0.2 449,184 + GFF1797 0.57 -0.8 449,184 + GFF1797 0.57 -0.8 449,185 - GFF1797 0.57 +0.5 449,185 - GFF1797 0.57 -0.6 449,242 - GFF1797 0.60 -1.2 449,242 - GFF1797 0.60 -1.1 449,536 - GFF1797 0.73 -1.2 449,537 + GFF1797 0.73 -0.6 449,537 + GFF1797 0.73 -0.8 449,538 - GFF1797 0.73 -0.8 449,661 + GFF1797 0.78 -1.4 449,662 - GFF1797 0.78 -0.5 449,796 + GFF1797 0.85 -1.6 449,808 + GFF1797 0.85 +0.5 449,809 - GFF1797 0.85 -0.2 449,809 - GFF1797 0.85 +1.8 450,000 + -0.4 450,196 + +0.2 450,196 + -0.9 450,201 + +0.5 450,963 - +0.0 451,063 + GFF1799 0.10 -0.9 451,063 + GFF1799 0.10 -0.3 451,064 - GFF1799 0.10 -0.2 451,094 - GFF1799 0.13 -0.2 451,111 + GFF1799 0.14 -0.2 451,112 - GFF1799 0.14 +0.4
Or see this region's nucleotide sequence