Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1785 and GFF1786 are separated by 225 nucleotides GFF1786 and GFF1787 are separated by 12 nucleotides GFF1787 and GFF1788 are separated by 33 nucleotides
GFF1785 - 50S ribosomal protein L28, at 434,561 to 434,857
GFF1785
GFF1786 - Endo-1,4-beta-xylanase A, at 435,083 to 435,613
GFF1786
GFF1787 - HTH-type transcriptional regulator HdfR, at 435,626 to 436,675
GFF1787
GFF1788 - Putative 3-oxopropanoate dehydrogenase, at 436,709 to 438,205
GFF1788
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1 at 434.881 kb on - strand at 434.989 kb on - strand at 435.249 kb on - strand, within GFF1786 at 435.251 kb on - strand, within GFF1786 at 435.596 kb on + strand at 435.924 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.038 kb on + strand, within GFF1787 at 436.053 kb on + strand, within GFF1787 at 436.368 kb on + strand, within GFF1787 at 436.920 kb on - strand, within GFF1788 at 436.946 kb on + strand, within GFF1788 at 437.108 kb on + strand, within GFF1788 at 437.108 kb on + strand, within GFF1788 at 437.109 kb on - strand, within GFF1788 at 437.402 kb on + strand, within GFF1788 at 437.402 kb on + strand, within GFF1788 at 437.403 kb on - strand, within GFF1788 at 437.403 kb on - strand, within GFF1788 at 437.408 kb on + strand, within GFF1788 at 437.408 kb on + strand, within GFF1788 at 437.408 kb on + strand, within GFF1788 at 437.409 kb on - strand, within GFF1788 at 437.409 kb on - strand, within GFF1788 at 437.409 kb on - strand, within GFF1788 at 437.409 kb on - strand, within GFF1788
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 434,881 - -0.9 434,989 - -2.5 435,249 - GFF1786 0.31 +1.6 435,251 - GFF1786 0.32 -0.1 435,596 + +0.4 435,924 + GFF1787 0.28 +0.1 436,038 + GFF1787 0.39 -1.0 436,038 + GFF1787 0.39 +0.1 436,038 + GFF1787 0.39 -0.9 436,053 + GFF1787 0.41 -1.1 436,368 + GFF1787 0.71 -0.6 436,920 - GFF1788 0.14 -0.2 436,946 + GFF1788 0.16 -1.6 437,108 + GFF1788 0.27 +0.2 437,108 + GFF1788 0.27 -0.1 437,109 - GFF1788 0.27 -0.8 437,402 + GFF1788 0.46 -1.2 437,402 + GFF1788 0.46 -0.7 437,403 - GFF1788 0.46 -0.3 437,403 - GFF1788 0.46 +0.3 437,408 + GFF1788 0.47 +0.6 437,408 + GFF1788 0.47 -0.5 437,408 + GFF1788 0.47 -0.7 437,409 - GFF1788 0.47 +1.1 437,409 - GFF1788 0.47 +0.3 437,409 - GFF1788 0.47 +0.1 437,409 - GFF1788 0.47 +0.6
Or see this region's nucleotide sequence