Strain Fitness in Xanthobacter sp. DMC5 around GFF1768

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1767 and GFF1768 are separated by 22 nucleotidesGFF1768 and GFF1769 overlap by 1 nucleotides GFF1767 - Signal recognition particle receptor FtsY, at 417,537 to 418,853 GFF1767 GFF1768 - Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB, at 418,876 to 420,162 GFF1768 GFF1769 - Diaminopimelate epimerase, at 420,162 to 421,019 GFF1769 Position (kb) 418 419 420 421Strain fitness (log2 ratio) -1 0 1at 418.981 kb on - strandat 419.154 kb on - strand, within GFF1768at 420.152 kb on - strandat 421.057 kb on - strandat 421.057 kb on - strandat 421.141 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
418,981 - -0.7
419,154 - GFF1768 0.22 -1.6
420,152 - -0.7
421,057 - -0.1
421,057 - -0.2
421,141 - +0.8

Or see this region's nucleotide sequence