Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1749 and GFF1750 are separated by 170 nucleotides GFF1750 and GFF1751 are separated by 66 nucleotides
GFF1749 - hypothetical protein, at 397,545 to 398,252
GFF1749
GFF1750 - hypothetical protein, at 398,423 to 399,166
GFF1750
GFF1751 - Dimethyl sulfoxide reductase DmsA, at 399,233 to 401,353
GFF1751
Position (kb) 398
399
400 Strain fitness (log2 ratio) -2
-1
0
1 at 397.454 kb on - strand at 397.477 kb on - strand at 397.606 kb on + strand at 397.606 kb on + strand at 397.606 kb on + strand at 397.606 kb on + strand at 397.607 kb on - strand at 397.607 kb on - strand at 397.802 kb on - strand, within GFF1749 at 397.874 kb on + strand, within GFF1749 at 397.874 kb on + strand, within GFF1749 at 397.875 kb on - strand, within GFF1749 at 397.963 kb on + strand, within GFF1749 at 398.619 kb on - strand, within GFF1750 at 398.718 kb on + strand, within GFF1750 at 398.718 kb on + strand, within GFF1750 at 398.718 kb on + strand, within GFF1750 at 398.718 kb on + strand, within GFF1750 at 398.719 kb on - strand, within GFF1750 at 398.732 kb on - strand, within GFF1750 at 398.994 kb on - strand, within GFF1750 at 398.994 kb on - strand, within GFF1750 at 398.994 kb on - strand, within GFF1750 at 399.065 kb on + strand, within GFF1750 at 399.066 kb on - strand, within GFF1750 at 399.110 kb on + strand at 399.218 kb on + strand at 399.219 kb on - strand at 399.392 kb on + strand at 399.393 kb on - strand at 399.428 kb on + strand at 399.428 kb on + strand at 399.597 kb on - strand, within GFF1751 at 399.597 kb on - strand, within GFF1751 at 399.599 kb on + strand, within GFF1751 at 399.600 kb on - strand, within GFF1751 at 399.600 kb on - strand, within GFF1751 at 399.600 kb on - strand, within GFF1751 at 399.602 kb on + strand, within GFF1751 at 399.603 kb on - strand, within GFF1751 at 399.666 kb on - strand, within GFF1751 at 399.713 kb on + strand, within GFF1751 at 399.714 kb on - strand, within GFF1751 at 399.714 kb on - strand, within GFF1751 at 399.881 kb on + strand, within GFF1751 at 400.001 kb on + strand, within GFF1751 at 400.001 kb on + strand, within GFF1751 at 400.002 kb on - strand, within GFF1751 at 400.002 kb on - strand, within GFF1751 at 400.002 kb on - strand, within GFF1751 at 400.002 kb on - strand, within GFF1751 at 400.002 kb on - strand, within GFF1751 at 400.014 kb on - strand, within GFF1751 at 400.014 kb on - strand, within GFF1751 at 400.014 kb on - strand, within GFF1751 at 400.112 kb on + strand, within GFF1751 at 400.146 kb on - strand, within GFF1751 at 400.160 kb on + strand, within GFF1751
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 397,454 - -0.4 397,477 - +1.0 397,606 + -0.4 397,606 + +0.9 397,606 + -0.2 397,606 + -0.0 397,607 - -0.5 397,607 - -0.3 397,802 - GFF1749 0.36 -0.1 397,874 + GFF1749 0.46 -0.1 397,874 + GFF1749 0.46 +0.2 397,875 - GFF1749 0.47 +0.0 397,963 + GFF1749 0.59 -0.8 398,619 - GFF1750 0.26 -0.4 398,718 + GFF1750 0.40 +0.1 398,718 + GFF1750 0.40 +0.8 398,718 + GFF1750 0.40 +0.8 398,718 + GFF1750 0.40 +0.4 398,719 - GFF1750 0.40 -0.4 398,732 - GFF1750 0.42 -0.4 398,994 - GFF1750 0.77 +1.1 398,994 - GFF1750 0.77 +0.8 398,994 - GFF1750 0.77 -0.1 399,065 + GFF1750 0.86 -0.1 399,066 - GFF1750 0.86 -0.5 399,110 + +0.4 399,218 + -0.2 399,219 - +0.4 399,392 + +0.1 399,393 - +0.3 399,428 + +0.1 399,428 + +0.1 399,597 - GFF1751 0.17 +1.0 399,597 - GFF1751 0.17 -0.3 399,599 + GFF1751 0.17 +0.7 399,600 - GFF1751 0.17 -0.6 399,600 - GFF1751 0.17 -0.1 399,600 - GFF1751 0.17 -0.4 399,602 + GFF1751 0.17 +0.8 399,603 - GFF1751 0.17 +0.2 399,666 - GFF1751 0.20 -0.2 399,713 + GFF1751 0.23 +0.1 399,714 - GFF1751 0.23 -0.4 399,714 - GFF1751 0.23 -0.8 399,881 + GFF1751 0.31 +0.0 400,001 + GFF1751 0.36 -2.7 400,001 + GFF1751 0.36 +0.1 400,002 - GFF1751 0.36 -0.1 400,002 - GFF1751 0.36 +0.3 400,002 - GFF1751 0.36 +0.1 400,002 - GFF1751 0.36 +0.4 400,002 - GFF1751 0.36 -0.9 400,014 - GFF1751 0.37 +0.2 400,014 - GFF1751 0.37 +1.0 400,014 - GFF1751 0.37 +0.1 400,112 + GFF1751 0.41 -0.2 400,146 - GFF1751 0.43 -0.2 400,160 + GFF1751 0.44 -1.2
Or see this region's nucleotide sequence