Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1738 and GFF1739 are separated by 86 nucleotides GFF1739 and GFF1740 are separated by 107 nucleotides
GFF1738 - UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase, at 386,082 to 387,236
GFF1738
GFF1739 - Putrescine-binding periplasmic protein SpuD, at 387,323 to 388,429
GFF1739
GFF1740 - Gamma-glutamylputrescine synthetase PuuA, at 388,537 to 389,940
GFF1740
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 387.256 kb on - strand at 387.274 kb on + strand at 387.274 kb on + strand at 387.274 kb on + strand at 387.430 kb on - strand at 387.496 kb on - strand, within GFF1739 at 387.640 kb on - strand, within GFF1739 at 387.705 kb on + strand, within GFF1739 at 387.706 kb on - strand, within GFF1739 at 387.733 kb on + strand, within GFF1739 at 387.733 kb on + strand, within GFF1739 at 387.765 kb on + strand, within GFF1739 at 387.792 kb on + strand, within GFF1739 at 387.890 kb on + strand, within GFF1739 at 387.890 kb on + strand, within GFF1739 at 388.020 kb on + strand, within GFF1739 at 388.047 kb on + strand, within GFF1739 at 388.047 kb on + strand, within GFF1739 at 388.047 kb on + strand, within GFF1739 at 388.047 kb on + strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.048 kb on - strand, within GFF1739 at 388.113 kb on + strand, within GFF1739 at 388.113 kb on + strand, within GFF1739 at 388.113 kb on + strand, within GFF1739 at 388.113 kb on + strand, within GFF1739 at 388.114 kb on - strand, within GFF1739 at 388.114 kb on - strand, within GFF1739 at 388.114 kb on - strand, within GFF1739 at 388.114 kb on - strand, within GFF1739 at 388.324 kb on + strand at 388.326 kb on + strand at 388.326 kb on + strand at 388.326 kb on + strand at 388.327 kb on - strand at 388.412 kb on + strand at 388.413 kb on - strand at 388.413 kb on - strand at 388.544 kb on + strand at 388.545 kb on - strand at 388.553 kb on + strand at 388.553 kb on + strand at 388.553 kb on + strand at 388.613 kb on + strand at 388.613 kb on + strand at 388.614 kb on - strand at 388.614 kb on - strand at 388.614 kb on - strand at 388.625 kb on + strand at 388.626 kb on - strand at 388.721 kb on + strand, within GFF1740 at 388.721 kb on + strand, within GFF1740 at 388.961 kb on + strand, within GFF1740 at 388.962 kb on - strand, within GFF1740 at 389.200 kb on + strand, within GFF1740 at 389.201 kb on - strand, within GFF1740 at 389.201 kb on - strand, within GFF1740 at 389.240 kb on + strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 387,256 - -0.6 387,274 + -0.6 387,274 + -0.6 387,274 + -0.9 387,430 - -0.6 387,496 - GFF1739 0.16 +0.8 387,640 - GFF1739 0.29 +0.5 387,705 + GFF1739 0.35 -0.8 387,706 - GFF1739 0.35 -1.5 387,733 + GFF1739 0.37 -0.6 387,733 + GFF1739 0.37 -0.8 387,765 + GFF1739 0.40 -0.8 387,792 + GFF1739 0.42 +0.3 387,890 + GFF1739 0.51 -1.3 387,890 + GFF1739 0.51 -0.1 388,020 + GFF1739 0.63 -0.6 388,047 + GFF1739 0.65 -0.5 388,047 + GFF1739 0.65 -0.6 388,047 + GFF1739 0.65 +0.0 388,047 + GFF1739 0.65 +0.2 388,048 - GFF1739 0.65 -0.4 388,048 - GFF1739 0.65 -0.9 388,048 - GFF1739 0.65 -0.9 388,048 - GFF1739 0.65 +0.2 388,048 - GFF1739 0.65 -0.9 388,048 - GFF1739 0.65 -0.3 388,113 + GFF1739 0.71 +0.4 388,113 + GFF1739 0.71 -0.8 388,113 + GFF1739 0.71 -0.4 388,113 + GFF1739 0.71 -1.0 388,114 - GFF1739 0.71 -0.7 388,114 - GFF1739 0.71 -1.2 388,114 - GFF1739 0.71 -0.1 388,114 - GFF1739 0.71 -0.4 388,324 + -2.2 388,326 + -0.7 388,326 + +0.1 388,326 + -0.2 388,327 - -0.2 388,412 + -0.9 388,413 - -1.1 388,413 - -1.4 388,544 + -1.2 388,545 - +0.2 388,553 + -0.4 388,553 + -0.9 388,553 + -2.1 388,613 + -0.5 388,613 + -0.9 388,614 - +0.1 388,614 - -0.4 388,614 - +1.1 388,625 + -0.5 388,626 - +0.8 388,721 + GFF1740 0.13 +0.6 388,721 + GFF1740 0.13 -1.9 388,961 + GFF1740 0.30 -0.2 388,962 - GFF1740 0.30 +1.2 389,200 + GFF1740 0.47 +0.6 389,201 - GFF1740 0.47 -0.0 389,201 - GFF1740 0.47 +0.3 389,240 + GFF1740 0.50 -0.4 389,370 - GFF1740 0.59 +0.6 389,370 - GFF1740 0.59 -1.2 389,370 - GFF1740 0.59 -0.9 389,370 - GFF1740 0.59 +0.0 389,370 - GFF1740 0.59 +0.6 389,370 - GFF1740 0.59 -1.4
Or see this region's nucleotide sequence