Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1724 and GFF1725 are separated by 343 nucleotides GFF1725 and GFF1726 overlap by 4 nucleotides GFF1726 and GFF1727 are separated by 115 nucleotides
GFF1724 - hypothetical protein, at 373,125 to 373,955
GFF1724
GFF1725 - putative glycosyltransferase, at 374,299 to 375,333
GFF1725
GFF1726 - Chitooligosaccharide deacetylase, at 375,330 to 376,178
GFF1726
GFF1727 - putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B, at 376,294 to 376,938
GFF1727
Position (kb) 374
375
376 Strain fitness (log2 ratio) -1
0
1 at 373.485 kb on + strand, within GFF1724 at 373.486 kb on - strand, within GFF1724 at 373.523 kb on - strand, within GFF1724 at 373.523 kb on - strand, within GFF1724 at 373.523 kb on - strand, within GFF1724 at 373.523 kb on - strand, within GFF1724 at 373.523 kb on - strand, within GFF1724 at 373.523 kb on - strand, within GFF1724 at 373.523 kb on - strand, within GFF1724 at 373.630 kb on + strand, within GFF1724 at 373.631 kb on - strand, within GFF1724 at 373.631 kb on - strand, within GFF1724 at 373.631 kb on - strand, within GFF1724 at 373.813 kb on + strand, within GFF1724 at 373.814 kb on - strand, within GFF1724 at 373.814 kb on - strand, within GFF1724 at 373.814 kb on - strand, within GFF1724 at 373.814 kb on - strand, within GFF1724 at 373.837 kb on + strand, within GFF1724 at 373.838 kb on - strand, within GFF1724 at 373.894 kb on + strand at 374.332 kb on + strand at 374.333 kb on - strand at 374.428 kb on + strand, within GFF1725 at 374.429 kb on - strand, within GFF1725 at 374.429 kb on - strand, within GFF1725 at 374.524 kb on + strand, within GFF1725 at 374.525 kb on - strand, within GFF1725 at 374.732 kb on - strand, within GFF1725 at 374.732 kb on - strand, within GFF1725 at 374.732 kb on - strand, within GFF1725 at 375.047 kb on - strand, within GFF1725 at 375.172 kb on + strand, within GFF1725 at 375.173 kb on - strand, within GFF1725 at 375.173 kb on - strand, within GFF1725 at 375.215 kb on - strand, within GFF1725 at 375.217 kb on + strand, within GFF1725 at 375.217 kb on + strand, within GFF1725 at 375.218 kb on - strand, within GFF1725 at 375.218 kb on - strand, within GFF1725 at 375.360 kb on + strand at 375.360 kb on + strand at 375.600 kb on - strand, within GFF1726 at 376.080 kb on + strand, within GFF1726 at 376.080 kb on + strand, within GFF1726
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 373,485 + GFF1724 0.43 +0.2 373,486 - GFF1724 0.43 +0.3 373,523 - GFF1724 0.48 +0.2 373,523 - GFF1724 0.48 +0.1 373,523 - GFF1724 0.48 +0.4 373,523 - GFF1724 0.48 -0.2 373,523 - GFF1724 0.48 +0.4 373,523 - GFF1724 0.48 -0.1 373,523 - GFF1724 0.48 -0.3 373,630 + GFF1724 0.61 +0.4 373,631 - GFF1724 0.61 -0.8 373,631 - GFF1724 0.61 +0.5 373,631 - GFF1724 0.61 +1.0 373,813 + GFF1724 0.83 +0.3 373,814 - GFF1724 0.83 -0.4 373,814 - GFF1724 0.83 -0.5 373,814 - GFF1724 0.83 +0.0 373,814 - GFF1724 0.83 -0.3 373,837 + GFF1724 0.86 +0.4 373,838 - GFF1724 0.86 +1.5 373,894 + +1.2 374,332 + +0.6 374,333 - -0.1 374,428 + GFF1725 0.12 +0.2 374,429 - GFF1725 0.13 -0.4 374,429 - GFF1725 0.13 -0.1 374,524 + GFF1725 0.22 +0.4 374,525 - GFF1725 0.22 +0.2 374,732 - GFF1725 0.42 +0.8 374,732 - GFF1725 0.42 +1.7 374,732 - GFF1725 0.42 -1.4 375,047 - GFF1725 0.72 +0.2 375,172 + GFF1725 0.84 +0.0 375,173 - GFF1725 0.84 -0.6 375,173 - GFF1725 0.84 -0.4 375,215 - GFF1725 0.89 -0.9 375,217 + GFF1725 0.89 -1.1 375,217 + GFF1725 0.89 +1.5 375,218 - GFF1725 0.89 -0.8 375,218 - GFF1725 0.89 -0.5 375,360 + -0.1 375,360 + -0.3 375,600 - GFF1726 0.32 +0.1 376,080 + GFF1726 0.88 -0.5 376,080 + GFF1726 0.88 -0.2
Or see this region's nucleotide sequence