Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1713 and GFF1714 overlap by 4 nucleotides GFF1714 and GFF1715 are separated by 189 nucleotides GFF1715 and GFF1716 are separated by 24 nucleotides GFF1716 and GFF1717 are separated by 72 nucleotides
GFF1713 - Glyoxylate/hydroxypyruvate reductase A, at 360,935 to 361,897
GFF1713
GFF1714 - 3-dehydroquinate dehydratase, at 361,894 to 362,355
GFF1714
GFF1715 - hypothetical protein, at 362,545 to 362,922
GFF1715
GFF1716 - hypothetical protein, at 362,947 to 363,354
GFF1716
GFF1717 - multidrug efflux RND transporter permease subunit OqxB9, at 363,427 to 366,606
GFF1717
Position (kb) 362
363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 361.738 kb on - strand, within GFF1713 at 361.738 kb on - strand, within GFF1713 at 361.850 kb on + strand at 361.860 kb on + strand at 361.860 kb on + strand at 361.861 kb on - strand at 362.112 kb on + strand, within GFF1714 at 362.113 kb on - strand, within GFF1714 at 362.114 kb on + strand, within GFF1714 at 362.114 kb on + strand, within GFF1714 at 362.114 kb on + strand, within GFF1714 at 362.114 kb on + strand, within GFF1714 at 362.115 kb on - strand, within GFF1714 at 362.115 kb on - strand, within GFF1714 at 362.241 kb on - strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.285 kb on + strand, within GFF1714 at 362.286 kb on - strand, within GFF1714 at 362.286 kb on - strand, within GFF1714 at 362.286 kb on - strand, within GFF1714 at 362.286 kb on - strand, within GFF1714 at 362.309 kb on + strand at 362.310 kb on - strand at 362.310 kb on - strand at 362.310 kb on - strand at 362.459 kb on + strand at 362.558 kb on + strand at 362.746 kb on + strand, within GFF1715 at 362.746 kb on + strand, within GFF1715 at 362.746 kb on + strand, within GFF1715 at 362.861 kb on - strand, within GFF1715 at 363.028 kb on + strand, within GFF1716 at 363.031 kb on + strand, within GFF1716 at 363.031 kb on + strand, within GFF1716 at 363.289 kb on + strand, within GFF1716 at 363.513 kb on - strand at 363.529 kb on + strand at 363.911 kb on + strand, within GFF1717 at 363.911 kb on + strand, within GFF1717 at 363.911 kb on + strand, within GFF1717 at 363.912 kb on - strand, within GFF1717
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 361,738 - GFF1713 0.83 -0.5 361,738 - GFF1713 0.83 -0.2 361,850 + +0.5 361,860 + +0.0 361,860 + +0.3 361,861 - +0.6 362,112 + GFF1714 0.47 -0.0 362,113 - GFF1714 0.47 +0.7 362,114 + GFF1714 0.48 +0.9 362,114 + GFF1714 0.48 -0.2 362,114 + GFF1714 0.48 +1.2 362,114 + GFF1714 0.48 -0.5 362,115 - GFF1714 0.48 +0.1 362,115 - GFF1714 0.48 +0.4 362,241 - GFF1714 0.75 +0.2 362,285 + GFF1714 0.85 +0.7 362,285 + GFF1714 0.85 +2.1 362,285 + GFF1714 0.85 +1.2 362,285 + GFF1714 0.85 +0.9 362,285 + GFF1714 0.85 +1.4 362,286 - GFF1714 0.85 +0.3 362,286 - GFF1714 0.85 -0.1 362,286 - GFF1714 0.85 +0.8 362,286 - GFF1714 0.85 +0.4 362,309 + +0.2 362,310 - -0.3 362,310 - -0.1 362,310 - +0.7 362,459 + +0.4 362,558 + -1.9 362,746 + GFF1715 0.53 -0.3 362,746 + GFF1715 0.53 -0.1 362,746 + GFF1715 0.53 -0.6 362,861 - GFF1715 0.84 -0.3 363,028 + GFF1716 0.20 +0.1 363,031 + GFF1716 0.21 -0.3 363,031 + GFF1716 0.21 +0.8 363,289 + GFF1716 0.84 +0.3 363,513 - -0.1 363,529 + +1.8 363,911 + GFF1717 0.15 -0.1 363,911 + GFF1717 0.15 -0.6 363,911 + GFF1717 0.15 +0.2 363,912 - GFF1717 0.15 +0.7
Or see this region's nucleotide sequence