Strain Fitness in Xanthobacter sp. DMC5 around GFF1704

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1703 and GFF1704 overlap by 11 nucleotidesGFF1704 and GFF1705 overlap by 1 nucleotides GFF1703 - Spermidine/putrescine import ATP-binding protein PotA, at 351,993 to 353,150 GFF1703 GFF1704 - Inner membrane ABC transporter permease protein YdcV, at 353,140 to 353,982 GFF1704 GFF1705 - hypothetical protein, at 353,982 to 354,833 GFF1705 Position (kb) 353 354Strain fitness (log2 ratio) -2 -1 0 1at 352.162 kb on + strand, within GFF1703at 352.162 kb on + strand, within GFF1703at 352.163 kb on - strand, within GFF1703at 352.163 kb on - strand, within GFF1703at 352.265 kb on + strand, within GFF1703at 352.275 kb on - strand, within GFF1703at 352.408 kb on + strand, within GFF1703at 352.408 kb on + strand, within GFF1703at 352.408 kb on + strand, within GFF1703at 352.780 kb on + strand, within GFF1703at 352.780 kb on + strand, within GFF1703at 352.781 kb on - strand, within GFF1703at 352.781 kb on - strand, within GFF1703at 352.822 kb on + strand, within GFF1703at 352.823 kb on - strand, within GFF1703at 352.855 kb on + strand, within GFF1703at 352.855 kb on + strand, within GFF1703at 352.855 kb on + strand, within GFF1703at 352.855 kb on + strand, within GFF1703at 352.856 kb on - strand, within GFF1703at 353.225 kb on + strand, within GFF1704at 353.225 kb on + strand, within GFF1704at 353.226 kb on - strand, within GFF1704at 353.226 kb on - strand, within GFF1704at 353.262 kb on - strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.279 kb on + strand, within GFF1704at 353.280 kb on - strand, within GFF1704at 353.280 kb on - strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.899 kb on - strandat 354.116 kb on - strand, within GFF1705at 354.116 kb on - strand, within GFF1705at 354.299 kb on - strand, within GFF1705at 354.484 kb on + strand, within GFF1705at 354.484 kb on + strand, within GFF1705at 354.484 kb on + strand, within GFF1705at 354.485 kb on - strand, within GFF1705at 354.485 kb on - strand, within GFF1705at 354.528 kb on - strand, within GFF1705at 354.528 kb on - strand, within GFF1705at 354.658 kb on + strand, within GFF1705at 354.659 kb on - strand, within GFF1705at 354.659 kb on - strand, within GFF1705at 354.727 kb on + strand, within GFF1705at 354.727 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.742 kb on + strand, within GFF1705at 354.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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352,162 + GFF1703 0.15 +0.6
352,162 + GFF1703 0.15 +0.2
352,163 - GFF1703 0.15 +0.5
352,163 - GFF1703 0.15 +0.1
352,265 + GFF1703 0.23 -0.3
352,275 - GFF1703 0.24 +0.0
352,408 + GFF1703 0.36 -1.5
352,408 + GFF1703 0.36 +0.2
352,408 + GFF1703 0.36 +1.5
352,780 + GFF1703 0.68 +0.2
352,780 + GFF1703 0.68 +0.6
352,781 - GFF1703 0.68 +1.1
352,781 - GFF1703 0.68 +0.0
352,822 + GFF1703 0.72 +1.1
352,823 - GFF1703 0.72 -0.3
352,855 + GFF1703 0.74 +0.0
352,855 + GFF1703 0.74 -0.3
352,855 + GFF1703 0.74 +0.1
352,855 + GFF1703 0.74 -0.0
352,856 - GFF1703 0.75 +0.2
353,225 + GFF1704 0.10 +0.2
353,225 + GFF1704 0.10 +0.1
353,226 - GFF1704 0.10 -0.8
353,226 - GFF1704 0.10 -0.7
353,262 - GFF1704 0.14 +1.4
353,273 + GFF1704 0.16 -0.2
353,273 + GFF1704 0.16 +0.5
353,273 + GFF1704 0.16 +0.1
353,273 + GFF1704 0.16 +0.1
353,273 + GFF1704 0.16 -0.1
353,274 - GFF1704 0.16 -0.3
353,274 - GFF1704 0.16 -0.1
353,274 - GFF1704 0.16 -0.1
353,274 - GFF1704 0.16 -2.3
353,279 + GFF1704 0.16 +0.1
353,280 - GFF1704 0.17 +0.4
353,280 - GFF1704 0.17 -0.3
353,492 + GFF1704 0.42 -0.6
353,492 + GFF1704 0.42 -0.9
353,492 + GFF1704 0.42 -0.6
353,493 - GFF1704 0.42 -0.7
353,493 - GFF1704 0.42 +0.6
353,493 - GFF1704 0.42 +0.7
353,493 - GFF1704 0.42 -0.3
353,493 - GFF1704 0.42 +1.2
353,899 - -1.1
354,116 - GFF1705 0.16 +0.7
354,116 - GFF1705 0.16 -0.2
354,299 - GFF1705 0.37 +0.1
354,484 + GFF1705 0.59 -0.4
354,484 + GFF1705 0.59 +0.2
354,484 + GFF1705 0.59 -0.9
354,485 - GFF1705 0.59 +0.2
354,485 - GFF1705 0.59 +1.1
354,528 - GFF1705 0.64 -0.2
354,528 - GFF1705 0.64 -0.8
354,658 + GFF1705 0.79 -0.9
354,659 - GFF1705 0.79 -0.1
354,659 - GFF1705 0.79 -0.0
354,727 + GFF1705 0.87 +0.1
354,727 + GFF1705 0.87 +0.8
354,742 + GFF1705 0.89 +0.2
354,742 + GFF1705 0.89 -0.1
354,742 + GFF1705 0.89 -0.5
354,742 + GFF1705 0.89 +0.8
354,742 + GFF1705 0.89 +0.8
354,742 + GFF1705 0.89 +0.8
354,742 + GFF1705 0.89 +0.3
354,974 - -0.7

Or see this region's nucleotide sequence