Strain Fitness in Xanthobacter sp. DMC5 around GFF1703

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1701 and GFF1702 are separated by 44 nucleotidesGFF1702 and GFF1703 are separated by 40 nucleotidesGFF1703 and GFF1704 overlap by 11 nucleotidesGFF1704 and GFF1705 overlap by 1 nucleotides GFF1701 - Acetylornithine deacetylase, at 350,082 to 351,254 GFF1701 GFF1702 - hypothetical protein, at 351,299 to 351,952 GFF1702 GFF1703 - Spermidine/putrescine import ATP-binding protein PotA, at 351,993 to 353,150 GFF1703 GFF1704 - Inner membrane ABC transporter permease protein YdcV, at 353,140 to 353,982 GFF1704 GFF1705 - hypothetical protein, at 353,982 to 354,833 GFF1705 Position (kb) 351 352 353 354Strain fitness (log2 ratio) -2 -1 0 1at 351.044 kb on + strand, within GFF1701at 351.044 kb on + strand, within GFF1701at 351.045 kb on - strand, within GFF1701at 351.353 kb on - strandat 351.809 kb on + strand, within GFF1702at 351.888 kb on - strandat 351.888 kb on - strandat 351.888 kb on - strandat 352.162 kb on + strand, within GFF1703at 352.162 kb on + strand, within GFF1703at 352.163 kb on - strand, within GFF1703at 352.163 kb on - strand, within GFF1703at 352.265 kb on + strand, within GFF1703at 352.275 kb on - strand, within GFF1703at 352.408 kb on + strand, within GFF1703at 352.408 kb on + strand, within GFF1703at 352.408 kb on + strand, within GFF1703at 352.780 kb on + strand, within GFF1703at 352.780 kb on + strand, within GFF1703at 352.781 kb on - strand, within GFF1703at 352.781 kb on - strand, within GFF1703at 352.822 kb on + strand, within GFF1703at 352.823 kb on - strand, within GFF1703at 352.855 kb on + strand, within GFF1703at 352.855 kb on + strand, within GFF1703at 352.855 kb on + strand, within GFF1703at 352.855 kb on + strand, within GFF1703at 352.856 kb on - strand, within GFF1703at 353.225 kb on + strand, within GFF1704at 353.225 kb on + strand, within GFF1704at 353.226 kb on - strand, within GFF1704at 353.226 kb on - strand, within GFF1704at 353.262 kb on - strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.273 kb on + strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.274 kb on - strand, within GFF1704at 353.279 kb on + strand, within GFF1704at 353.280 kb on - strand, within GFF1704at 353.280 kb on - strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.492 kb on + strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.493 kb on - strand, within GFF1704at 353.899 kb on - strandat 354.116 kb on - strand, within GFF1705at 354.116 kb on - strand, within GFF1705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
351,044 + GFF1701 0.82 +0.4
351,044 + GFF1701 0.82 -1.1
351,045 - GFF1701 0.82 +0.3
351,353 - -0.2
351,809 + GFF1702 0.78 +0.7
351,888 - -1.0
351,888 - -1.2
351,888 - +0.7
352,162 + GFF1703 0.15 +0.6
352,162 + GFF1703 0.15 +0.2
352,163 - GFF1703 0.15 +0.5
352,163 - GFF1703 0.15 +0.1
352,265 + GFF1703 0.23 -0.3
352,275 - GFF1703 0.24 +0.0
352,408 + GFF1703 0.36 -1.5
352,408 + GFF1703 0.36 +0.2
352,408 + GFF1703 0.36 +1.5
352,780 + GFF1703 0.68 +0.2
352,780 + GFF1703 0.68 +0.6
352,781 - GFF1703 0.68 +1.1
352,781 - GFF1703 0.68 +0.0
352,822 + GFF1703 0.72 +1.1
352,823 - GFF1703 0.72 -0.3
352,855 + GFF1703 0.74 +0.0
352,855 + GFF1703 0.74 -0.3
352,855 + GFF1703 0.74 +0.1
352,855 + GFF1703 0.74 -0.0
352,856 - GFF1703 0.75 +0.2
353,225 + GFF1704 0.10 +0.2
353,225 + GFF1704 0.10 +0.1
353,226 - GFF1704 0.10 -0.8
353,226 - GFF1704 0.10 -0.7
353,262 - GFF1704 0.14 +1.4
353,273 + GFF1704 0.16 -0.2
353,273 + GFF1704 0.16 +0.5
353,273 + GFF1704 0.16 +0.1
353,273 + GFF1704 0.16 +0.1
353,273 + GFF1704 0.16 -0.1
353,274 - GFF1704 0.16 -0.3
353,274 - GFF1704 0.16 -0.1
353,274 - GFF1704 0.16 -0.1
353,274 - GFF1704 0.16 -2.3
353,279 + GFF1704 0.16 +0.1
353,280 - GFF1704 0.17 +0.4
353,280 - GFF1704 0.17 -0.3
353,492 + GFF1704 0.42 -0.6
353,492 + GFF1704 0.42 -0.9
353,492 + GFF1704 0.42 -0.6
353,493 - GFF1704 0.42 -0.7
353,493 - GFF1704 0.42 +0.6
353,493 - GFF1704 0.42 +0.7
353,493 - GFF1704 0.42 -0.3
353,493 - GFF1704 0.42 +1.2
353,899 - -1.1
354,116 - GFF1705 0.16 +0.7
354,116 - GFF1705 0.16 -0.2

Or see this region's nucleotide sequence