Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1701 and GFF1702 are separated by 44 nucleotides GFF1702 and GFF1703 are separated by 40 nucleotides GFF1703 and GFF1704 overlap by 11 nucleotides GFF1704 and GFF1705 overlap by 1 nucleotides
GFF1701 - Acetylornithine deacetylase, at 350,082 to 351,254
GFF1701
GFF1702 - hypothetical protein, at 351,299 to 351,952
GFF1702
GFF1703 - Spermidine/putrescine import ATP-binding protein PotA, at 351,993 to 353,150
GFF1703
GFF1704 - Inner membrane ABC transporter permease protein YdcV, at 353,140 to 353,982
GFF1704
GFF1705 - hypothetical protein, at 353,982 to 354,833
GFF1705
Position (kb) 351
352
353
354 Strain fitness (log2 ratio) -2
-1
0
1 at 351.044 kb on + strand, within GFF1701 at 351.044 kb on + strand, within GFF1701 at 351.045 kb on - strand, within GFF1701 at 351.353 kb on - strand at 351.809 kb on + strand, within GFF1702 at 351.888 kb on - strand at 351.888 kb on - strand at 351.888 kb on - strand at 352.162 kb on + strand, within GFF1703 at 352.162 kb on + strand, within GFF1703 at 352.163 kb on - strand, within GFF1703 at 352.163 kb on - strand, within GFF1703 at 352.265 kb on + strand, within GFF1703 at 352.275 kb on - strand, within GFF1703 at 352.408 kb on + strand, within GFF1703 at 352.408 kb on + strand, within GFF1703 at 352.408 kb on + strand, within GFF1703 at 352.780 kb on + strand, within GFF1703 at 352.780 kb on + strand, within GFF1703 at 352.781 kb on - strand, within GFF1703 at 352.781 kb on - strand, within GFF1703 at 352.822 kb on + strand, within GFF1703 at 352.823 kb on - strand, within GFF1703 at 352.855 kb on + strand, within GFF1703 at 352.855 kb on + strand, within GFF1703 at 352.855 kb on + strand, within GFF1703 at 352.855 kb on + strand, within GFF1703 at 352.856 kb on - strand, within GFF1703 at 353.225 kb on + strand, within GFF1704 at 353.225 kb on + strand, within GFF1704 at 353.226 kb on - strand, within GFF1704 at 353.226 kb on - strand, within GFF1704 at 353.262 kb on - strand, within GFF1704 at 353.273 kb on + strand, within GFF1704 at 353.273 kb on + strand, within GFF1704 at 353.273 kb on + strand, within GFF1704 at 353.273 kb on + strand, within GFF1704 at 353.273 kb on + strand, within GFF1704 at 353.274 kb on - strand, within GFF1704 at 353.274 kb on - strand, within GFF1704 at 353.274 kb on - strand, within GFF1704 at 353.274 kb on - strand, within GFF1704 at 353.279 kb on + strand, within GFF1704 at 353.280 kb on - strand, within GFF1704 at 353.280 kb on - strand, within GFF1704 at 353.492 kb on + strand, within GFF1704 at 353.492 kb on + strand, within GFF1704 at 353.492 kb on + strand, within GFF1704 at 353.493 kb on - strand, within GFF1704 at 353.493 kb on - strand, within GFF1704 at 353.493 kb on - strand, within GFF1704 at 353.493 kb on - strand, within GFF1704 at 353.493 kb on - strand, within GFF1704 at 353.899 kb on - strand at 354.116 kb on - strand, within GFF1705 at 354.116 kb on - strand, within GFF1705
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 351,044 + GFF1701 0.82 +0.4 351,044 + GFF1701 0.82 -1.1 351,045 - GFF1701 0.82 +0.3 351,353 - -0.2 351,809 + GFF1702 0.78 +0.7 351,888 - -1.0 351,888 - -1.2 351,888 - +0.7 352,162 + GFF1703 0.15 +0.6 352,162 + GFF1703 0.15 +0.2 352,163 - GFF1703 0.15 +0.5 352,163 - GFF1703 0.15 +0.1 352,265 + GFF1703 0.23 -0.3 352,275 - GFF1703 0.24 +0.0 352,408 + GFF1703 0.36 -1.5 352,408 + GFF1703 0.36 +0.2 352,408 + GFF1703 0.36 +1.5 352,780 + GFF1703 0.68 +0.2 352,780 + GFF1703 0.68 +0.6 352,781 - GFF1703 0.68 +1.1 352,781 - GFF1703 0.68 +0.0 352,822 + GFF1703 0.72 +1.1 352,823 - GFF1703 0.72 -0.3 352,855 + GFF1703 0.74 +0.0 352,855 + GFF1703 0.74 -0.3 352,855 + GFF1703 0.74 +0.1 352,855 + GFF1703 0.74 -0.0 352,856 - GFF1703 0.75 +0.2 353,225 + GFF1704 0.10 +0.2 353,225 + GFF1704 0.10 +0.1 353,226 - GFF1704 0.10 -0.8 353,226 - GFF1704 0.10 -0.7 353,262 - GFF1704 0.14 +1.4 353,273 + GFF1704 0.16 -0.2 353,273 + GFF1704 0.16 +0.5 353,273 + GFF1704 0.16 +0.1 353,273 + GFF1704 0.16 +0.1 353,273 + GFF1704 0.16 -0.1 353,274 - GFF1704 0.16 -0.3 353,274 - GFF1704 0.16 -0.1 353,274 - GFF1704 0.16 -0.1 353,274 - GFF1704 0.16 -2.3 353,279 + GFF1704 0.16 +0.1 353,280 - GFF1704 0.17 +0.4 353,280 - GFF1704 0.17 -0.3 353,492 + GFF1704 0.42 -0.6 353,492 + GFF1704 0.42 -0.9 353,492 + GFF1704 0.42 -0.6 353,493 - GFF1704 0.42 -0.7 353,493 - GFF1704 0.42 +0.6 353,493 - GFF1704 0.42 +0.7 353,493 - GFF1704 0.42 -0.3 353,493 - GFF1704 0.42 +1.2 353,899 - -1.1 354,116 - GFF1705 0.16 +0.7 354,116 - GFF1705 0.16 -0.2
Or see this region's nucleotide sequence