Strain Fitness in Xanthobacter sp. DMC5 around GFF1700

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1699 and GFF1700 are separated by 123 nucleotidesGFF1700 and GFF1701 are separated by 11 nucleotides GFF1699 - Arginine biosynthesis bifunctional protein ArgJ, at 348,277 to 349,518 GFF1699 GFF1700 - hypothetical protein, at 349,642 to 350,070 GFF1700 GFF1701 - Acetylornithine deacetylase, at 350,082 to 351,254 GFF1701 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1at 349.953 kb on - strand, within GFF1700at 350.221 kb on - strand, within GFF1701at 350.221 kb on - strand, within GFF1701at 350.569 kb on + strand, within GFF1701at 350.860 kb on + strand, within GFF1701at 350.861 kb on - strand, within GFF1701at 350.968 kb on + strand, within GFF1701at 351.044 kb on + strand, within GFF1701at 351.044 kb on + strand, within GFF1701at 351.045 kb on - strand, within GFF1701

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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349,953 - GFF1700 0.72 +0.4
350,221 - GFF1701 0.12 +1.0
350,221 - GFF1701 0.12 -1.8
350,569 + GFF1701 0.42 -1.0
350,860 + GFF1701 0.66 -0.0
350,861 - GFF1701 0.66 +0.1
350,968 + GFF1701 0.76 -0.3
351,044 + GFF1701 0.82 +0.4
351,044 + GFF1701 0.82 -1.1
351,045 - GFF1701 0.82 +0.3

Or see this region's nucleotide sequence