Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1695 and GFF1696 are separated by 136 nucleotides GFF1696 and GFF1697 are separated by 27 nucleotides GFF1697 and GFF1698 are separated by 7 nucleotides
GFF1695 - 3-isopropylmalate dehydrogenase, at 344,886 to 345,998
GFF1695
GFF1696 - 1-deoxy-11-beta-hydroxypentalenate dehydrogenase, at 346,135 to 346,986
GFF1696
GFF1697 - Aromatic amino acid exporter YddG, at 347,014 to 347,868
GFF1697
GFF1698 - CTP pyrophosphohydrolase, at 347,876 to 348,280
GFF1698
Position (kb) 346
347 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 345.145 kb on + strand, within GFF1695 at 345.146 kb on - strand, within GFF1695 at 345.283 kb on + strand, within GFF1695 at 345.284 kb on - strand, within GFF1695 at 345.353 kb on - strand, within GFF1695 at 345.355 kb on + strand, within GFF1695 at 345.355 kb on + strand, within GFF1695 at 345.356 kb on - strand, within GFF1695 at 345.356 kb on - strand, within GFF1695 at 345.356 kb on - strand, within GFF1695 at 345.356 kb on - strand, within GFF1695 at 345.496 kb on + strand, within GFF1695 at 345.496 kb on + strand, within GFF1695 at 345.497 kb on - strand, within GFF1695 at 345.506 kb on - strand, within GFF1695 at 345.575 kb on - strand, within GFF1695 at 345.575 kb on - strand, within GFF1695 at 345.837 kb on + strand, within GFF1695 at 345.838 kb on - strand, within GFF1695 at 345.838 kb on - strand, within GFF1695 at 345.854 kb on - strand, within GFF1695 at 345.854 kb on - strand, within GFF1695 at 346.002 kb on + strand at 346.002 kb on + strand at 346.024 kb on - strand at 346.085 kb on + strand at 346.132 kb on + strand at 346.173 kb on - strand at 346.286 kb on + strand, within GFF1696 at 346.286 kb on + strand, within GFF1696 at 346.286 kb on + strand, within GFF1696 at 346.286 kb on + strand, within GFF1696 at 346.286 kb on + strand, within GFF1696 at 346.287 kb on - strand, within GFF1696 at 346.287 kb on - strand, within GFF1696 at 346.502 kb on + strand, within GFF1696 at 346.502 kb on + strand, within GFF1696 at 346.503 kb on - strand, within GFF1696 at 346.758 kb on + strand, within GFF1696 at 346.758 kb on + strand, within GFF1696 at 347.136 kb on - strand, within GFF1697 at 347.136 kb on - strand, within GFF1697 at 347.192 kb on + strand, within GFF1697 at 347.193 kb on - strand, within GFF1697 at 347.193 kb on - strand, within GFF1697 at 347.374 kb on - strand, within GFF1697 at 347.415 kb on - strand, within GFF1697 at 347.415 kb on - strand, within GFF1697 at 347.577 kb on - strand, within GFF1697 at 347.577 kb on - strand, within GFF1697 at 347.670 kb on - strand, within GFF1697
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 345,145 + GFF1695 0.23 -1.6 345,146 - GFF1695 0.23 -2.6 345,283 + GFF1695 0.36 -3.2 345,284 - GFF1695 0.36 -0.3 345,353 - GFF1695 0.42 -2.1 345,355 + GFF1695 0.42 -2.2 345,355 + GFF1695 0.42 -1.8 345,356 - GFF1695 0.42 -3.5 345,356 - GFF1695 0.42 -3.9 345,356 - GFF1695 0.42 -2.2 345,356 - GFF1695 0.42 -2.2 345,496 + GFF1695 0.55 -0.6 345,496 + GFF1695 0.55 -1.9 345,497 - GFF1695 0.55 -1.5 345,506 - GFF1695 0.56 -2.3 345,575 - GFF1695 0.62 -0.8 345,575 - GFF1695 0.62 +0.5 345,837 + GFF1695 0.85 -1.6 345,838 - GFF1695 0.86 -2.1 345,838 - GFF1695 0.86 -1.9 345,854 - GFF1695 0.87 -1.9 345,854 - GFF1695 0.87 -1.8 346,002 + -3.5 346,002 + -1.8 346,024 - -0.3 346,085 + -0.4 346,132 + +0.1 346,173 - +0.5 346,286 + GFF1696 0.18 +0.3 346,286 + GFF1696 0.18 -0.0 346,286 + GFF1696 0.18 -0.2 346,286 + GFF1696 0.18 +0.4 346,286 + GFF1696 0.18 -0.2 346,287 - GFF1696 0.18 -0.2 346,287 - GFF1696 0.18 +0.4 346,502 + GFF1696 0.43 +0.4 346,502 + GFF1696 0.43 -1.0 346,503 - GFF1696 0.43 +0.7 346,758 + GFF1696 0.73 -0.1 346,758 + GFF1696 0.73 -0.5 347,136 - GFF1697 0.14 -0.1 347,136 - GFF1697 0.14 -0.1 347,192 + GFF1697 0.21 +0.1 347,193 - GFF1697 0.21 -0.6 347,193 - GFF1697 0.21 +1.5 347,374 - GFF1697 0.42 -0.5 347,415 - GFF1697 0.47 +1.5 347,415 - GFF1697 0.47 +0.1 347,577 - GFF1697 0.66 -0.0 347,577 - GFF1697 0.66 +0.4 347,670 - GFF1697 0.77 -0.2
Or see this region's nucleotide sequence