Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1693 and GFF1694 are separated by 277 nucleotides GFF1694 and GFF1695 are separated by 134 nucleotides GFF1695 and GFF1696 are separated by 136 nucleotides
GFF1693 - hypothetical protein, at 343,800 to 344,132
GFF1693
GFF1694 - Sulfurtransferase, at 344,410 to 344,751
GFF1694
GFF1695 - 3-isopropylmalate dehydrogenase, at 344,886 to 345,998
GFF1695
GFF1696 - 1-deoxy-11-beta-hydroxypentalenate dehydrogenase, at 346,135 to 346,986
GFF1696
Position (kb) 344
345
346 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 344.037 kb on - strand, within GFF1693 at 344.037 kb on - strand, within GFF1693 at 344.683 kb on + strand, within GFF1694 at 344.683 kb on + strand, within GFF1694 at 344.684 kb on - strand, within GFF1694 at 344.821 kb on + strand at 344.821 kb on + strand at 344.822 kb on - strand at 344.822 kb on - strand at 344.822 kb on - strand at 345.145 kb on + strand, within GFF1695 at 345.146 kb on - strand, within GFF1695 at 345.283 kb on + strand, within GFF1695 at 345.284 kb on - strand, within GFF1695 at 345.353 kb on - strand, within GFF1695 at 345.355 kb on + strand, within GFF1695 at 345.355 kb on + strand, within GFF1695 at 345.356 kb on - strand, within GFF1695 at 345.356 kb on - strand, within GFF1695 at 345.356 kb on - strand, within GFF1695 at 345.356 kb on - strand, within GFF1695 at 345.496 kb on + strand, within GFF1695 at 345.496 kb on + strand, within GFF1695 at 345.497 kb on - strand, within GFF1695 at 345.506 kb on - strand, within GFF1695 at 345.575 kb on - strand, within GFF1695 at 345.575 kb on - strand, within GFF1695 at 345.837 kb on + strand, within GFF1695 at 345.838 kb on - strand, within GFF1695 at 345.838 kb on - strand, within GFF1695 at 345.854 kb on - strand, within GFF1695 at 345.854 kb on - strand, within GFF1695 at 346.002 kb on + strand at 346.002 kb on + strand at 346.024 kb on - strand at 346.085 kb on + strand at 346.132 kb on + strand at 346.173 kb on - strand at 346.286 kb on + strand, within GFF1696 at 346.286 kb on + strand, within GFF1696 at 346.286 kb on + strand, within GFF1696 at 346.286 kb on + strand, within GFF1696 at 346.286 kb on + strand, within GFF1696 at 346.287 kb on - strand, within GFF1696 at 346.287 kb on - strand, within GFF1696 at 346.502 kb on + strand, within GFF1696 at 346.502 kb on + strand, within GFF1696 at 346.503 kb on - strand, within GFF1696 at 346.758 kb on + strand, within GFF1696 at 346.758 kb on + strand, within GFF1696
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 344,037 - GFF1693 0.71 -0.3 344,037 - GFF1693 0.71 -1.1 344,683 + GFF1694 0.80 -0.1 344,683 + GFF1694 0.80 -0.7 344,684 - GFF1694 0.80 +0.0 344,821 + -0.8 344,821 + +0.6 344,822 - -0.0 344,822 - -0.7 344,822 - +0.2 345,145 + GFF1695 0.23 -1.6 345,146 - GFF1695 0.23 -2.6 345,283 + GFF1695 0.36 -3.2 345,284 - GFF1695 0.36 -0.3 345,353 - GFF1695 0.42 -2.1 345,355 + GFF1695 0.42 -2.2 345,355 + GFF1695 0.42 -1.8 345,356 - GFF1695 0.42 -3.5 345,356 - GFF1695 0.42 -3.9 345,356 - GFF1695 0.42 -2.2 345,356 - GFF1695 0.42 -2.2 345,496 + GFF1695 0.55 -0.6 345,496 + GFF1695 0.55 -1.9 345,497 - GFF1695 0.55 -1.5 345,506 - GFF1695 0.56 -2.3 345,575 - GFF1695 0.62 -0.8 345,575 - GFF1695 0.62 +0.5 345,837 + GFF1695 0.85 -1.6 345,838 - GFF1695 0.86 -2.1 345,838 - GFF1695 0.86 -1.9 345,854 - GFF1695 0.87 -1.9 345,854 - GFF1695 0.87 -1.8 346,002 + -3.5 346,002 + -1.8 346,024 - -0.3 346,085 + -0.4 346,132 + +0.1 346,173 - +0.5 346,286 + GFF1696 0.18 +0.3 346,286 + GFF1696 0.18 -0.0 346,286 + GFF1696 0.18 -0.2 346,286 + GFF1696 0.18 +0.4 346,286 + GFF1696 0.18 -0.2 346,287 - GFF1696 0.18 -0.2 346,287 - GFF1696 0.18 +0.4 346,502 + GFF1696 0.43 +0.4 346,502 + GFF1696 0.43 -1.0 346,503 - GFF1696 0.43 +0.7 346,758 + GFF1696 0.73 -0.1 346,758 + GFF1696 0.73 -0.5
Or see this region's nucleotide sequence