Strain Fitness in Xanthobacter sp. DMC5 around GFF1654

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1653 and GFF1654 are separated by 2 nucleotidesGFF1654 and GFF1655 are separated by 15 nucleotides GFF1653 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 305,820 to 306,605 GFF1653 GFF1654 - Bifunctional chorismate mutase/prephenate dehydratase, at 306,608 to 307,474 GFF1654 GFF1655 - hypothetical protein, at 307,490 to 309,295 GFF1655 Position (kb) 306 307 308Strain fitness (log2 ratio) -2 -1 0 1at 305.727 kb on - strandat 305.756 kb on + strandat 305.758 kb on + strandat 306.848 kb on + strand, within GFF1654at 306.849 kb on - strand, within GFF1654at 306.849 kb on - strand, within GFF1654at 306.995 kb on - strand, within GFF1654at 306.995 kb on - strand, within GFF1654at 306.995 kb on - strand, within GFF1654at 306.995 kb on - strand, within GFF1654at 306.995 kb on - strand, within GFF1654at 307.076 kb on + strand, within GFF1654at 307.076 kb on + strand, within GFF1654at 307.076 kb on + strand, within GFF1654at 307.076 kb on + strand, within GFF1654at 307.189 kb on + strand, within GFF1654at 307.189 kb on + strand, within GFF1654at 307.190 kb on - strand, within GFF1654at 307.190 kb on - strand, within GFF1654at 307.233 kb on - strand, within GFF1654at 307.289 kb on + strand, within GFF1654at 307.289 kb on + strand, within GFF1654at 307.325 kb on + strand, within GFF1654at 307.325 kb on + strand, within GFF1654at 307.325 kb on + strand, within GFF1654at 307.325 kb on + strand, within GFF1654at 307.326 kb on - strand, within GFF1654at 307.326 kb on - strand, within GFF1654at 307.326 kb on - strand, within GFF1654at 307.326 kb on - strand, within GFF1654at 307.422 kb on - strandat 307.570 kb on + strandat 307.570 kb on + strandat 307.570 kb on + strandat 307.570 kb on + strandat 307.572 kb on + strandat 307.572 kb on + strandat 307.572 kb on + strandat 307.573 kb on - strandat 307.573 kb on - strandat 307.573 kb on - strandat 307.573 kb on - strandat 307.573 kb on - strandat 307.573 kb on - strandat 307.573 kb on - strandat 307.663 kb on - strandat 307.663 kb on - strandat 307.810 kb on + strand, within GFF1655at 307.878 kb on - strand, within GFF1655at 308.106 kb on + strand, within GFF1655at 308.107 kb on - strand, within GFF1655at 308.118 kb on + strand, within GFF1655at 308.118 kb on + strand, within GFF1655at 308.118 kb on + strand, within GFF1655at 308.119 kb on - strand, within GFF1655at 308.119 kb on - strand, within GFF1655at 308.119 kb on - strand, within GFF1655at 308.119 kb on - strand, within GFF1655at 308.180 kb on + strand, within GFF1655at 308.181 kb on - strand, within GFF1655at 308.181 kb on - strand, within GFF1655at 308.216 kb on - strand, within GFF1655

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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305,727 - +0.5
305,756 + -0.5
305,758 + +0.2
306,848 + GFF1654 0.28 -1.6
306,849 - GFF1654 0.28 -0.6
306,849 - GFF1654 0.28 +0.3
306,995 - GFF1654 0.45 -1.3
306,995 - GFF1654 0.45 -2.1
306,995 - GFF1654 0.45 -0.5
306,995 - GFF1654 0.45 -1.0
306,995 - GFF1654 0.45 -1.0
307,076 + GFF1654 0.54 -1.4
307,076 + GFF1654 0.54 -1.2
307,076 + GFF1654 0.54 -1.3
307,076 + GFF1654 0.54 -1.8
307,189 + GFF1654 0.67 -0.3
307,189 + GFF1654 0.67 -0.0
307,190 - GFF1654 0.67 -0.6
307,190 - GFF1654 0.67 -0.7
307,233 - GFF1654 0.72 -1.0
307,289 + GFF1654 0.79 -1.2
307,289 + GFF1654 0.79 -1.6
307,325 + GFF1654 0.83 -0.5
307,325 + GFF1654 0.83 -0.2
307,325 + GFF1654 0.83 +0.5
307,325 + GFF1654 0.83 +0.1
307,326 - GFF1654 0.83 -0.1
307,326 - GFF1654 0.83 -0.9
307,326 - GFF1654 0.83 +1.2
307,326 - GFF1654 0.83 -1.1
307,422 - +0.2
307,570 + +0.1
307,570 + +0.8
307,570 + -0.6
307,570 + -0.1
307,572 + -0.3
307,572 + +0.4
307,572 + +1.6
307,573 - -0.8
307,573 - -0.5
307,573 - +1.0
307,573 - -0.5
307,573 - +0.3
307,573 - +0.9
307,573 - +0.2
307,663 - -0.5
307,663 - +0.3
307,810 + GFF1655 0.18 -0.2
307,878 - GFF1655 0.21 -0.6
308,106 + GFF1655 0.34 +1.2
308,107 - GFF1655 0.34 +0.4
308,118 + GFF1655 0.35 +1.1
308,118 + GFF1655 0.35 +0.2
308,118 + GFF1655 0.35 -0.1
308,119 - GFF1655 0.35 +0.6
308,119 - GFF1655 0.35 +0.6
308,119 - GFF1655 0.35 +0.7
308,119 - GFF1655 0.35 -0.2
308,180 + GFF1655 0.38 +0.3
308,181 - GFF1655 0.38 +0.1
308,181 - GFF1655 0.38 +0.5
308,216 - GFF1655 0.40 -2.1

Or see this region's nucleotide sequence