Strain Fitness in Xanthobacter sp. DMC5 around GFF160

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF158 and GFF159 are separated by 105 nucleotidesGFF159 and GFF160 are separated by 164 nucleotidesGFF160 and GFF161 are separated by 309 nucleotidesGFF161 and GFF162 are separated by 12 nucleotides GFF158 - hypothetical protein, at 167,824 to 168,231 GFF158 GFF159 - hypothetical protein, at 168,337 to 168,609 GFF159 GFF160 - Acetyl-coenzyme A synthetase, at 168,774 to 170,726 GFF160 GFF161 - hypothetical protein, at 171,036 to 171,407 GFF161 GFF162 - Tetraacyldisaccharide 4'-kinase, at 171,420 to 172,436 GFF162 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -2 -1 0 1at 167.933 kb on - strand, within GFF158at 168.087 kb on + strand, within GFF158at 168.119 kb on - strand, within GFF158at 168.293 kb on + strandat 168.419 kb on - strand, within GFF159at 168.544 kb on + strand, within GFF159at 168.544 kb on + strand, within GFF159at 168.545 kb on - strand, within GFF159at 169.048 kb on + strand, within GFF160at 169.048 kb on + strand, within GFF160at 169.048 kb on + strand, within GFF160at 169.048 kb on + strand, within GFF160at 169.048 kb on + strand, within GFF160at 169.049 kb on - strand, within GFF160at 169.049 kb on - strand, within GFF160at 169.049 kb on - strand, within GFF160at 169.049 kb on - strand, within GFF160at 169.054 kb on + strand, within GFF160at 169.054 kb on + strand, within GFF160at 169.054 kb on + strand, within GFF160at 169.054 kb on + strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.055 kb on - strand, within GFF160at 169.204 kb on + strand, within GFF160at 169.246 kb on + strand, within GFF160at 169.247 kb on - strand, within GFF160at 169.258 kb on + strand, within GFF160at 169.259 kb on - strand, within GFF160at 169.259 kb on - strand, within GFF160at 169.269 kb on + strand, within GFF160at 169.271 kb on - strand, within GFF160at 169.300 kb on + strand, within GFF160at 169.300 kb on + strand, within GFF160at 169.301 kb on - strand, within GFF160at 169.499 kb on + strand, within GFF160at 169.500 kb on - strand, within GFF160at 169.537 kb on + strand, within GFF160at 169.538 kb on - strand, within GFF160at 169.541 kb on - strand, within GFF160at 169.541 kb on - strand, within GFF160at 169.670 kb on - strand, within GFF160at 169.780 kb on + strand, within GFF160at 169.780 kb on + strand, within GFF160at 169.789 kb on + strand, within GFF160at 169.789 kb on + strand, within GFF160at 169.790 kb on - strand, within GFF160at 169.832 kb on - strand, within GFF160at 169.832 kb on - strand, within GFF160at 169.832 kb on - strand, within GFF160at 169.832 kb on - strand, within GFF160at 169.861 kb on + strand, within GFF160at 169.891 kb on + strand, within GFF160at 169.946 kb on - strand, within GFF160at 170.023 kb on + strand, within GFF160at 170.027 kb on - strand, within GFF160at 170.027 kb on - strand, within GFF160at 170.317 kb on + strand, within GFF160at 170.317 kb on + strand, within GFF160at 170.318 kb on - strand, within GFF160at 170.318 kb on - strand, within GFF160at 170.551 kb on + strandat 170.552 kb on - strandat 170.552 kb on - strandat 170.647 kb on + strandat 170.648 kb on - strandat 170.648 kb on - strandat 170.648 kb on - strandat 170.659 kb on + strandat 170.677 kb on + strandat 170.677 kb on + strandat 170.710 kb on + strandat 170.859 kb on + strandat 170.860 kb on - strandat 170.860 kb on - strandat 170.860 kb on - strandat 170.907 kb on + strandat 170.984 kb on - strandat 170.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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167,933 - GFF158 0.27 -0.9
168,087 + GFF158 0.64 +1.3
168,119 - GFF158 0.72 -0.2
168,293 + +0.4
168,419 - GFF159 0.30 +0.3
168,544 + GFF159 0.76 -0.2
168,544 + GFF159 0.76 +0.8
168,545 - GFF159 0.76 +0.7
169,048 + GFF160 0.14 -0.4
169,048 + GFF160 0.14 -0.7
169,048 + GFF160 0.14 -0.2
169,048 + GFF160 0.14 +0.2
169,048 + GFF160 0.14 +0.7
169,049 - GFF160 0.14 -0.2
169,049 - GFF160 0.14 -0.7
169,049 - GFF160 0.14 +0.1
169,049 - GFF160 0.14 -0.4
169,054 + GFF160 0.14 -0.8
169,054 + GFF160 0.14 +0.7
169,054 + GFF160 0.14 -0.5
169,054 + GFF160 0.14 -0.4
169,055 - GFF160 0.14 -0.6
169,055 - GFF160 0.14 +0.8
169,055 - GFF160 0.14 -1.5
169,055 - GFF160 0.14 -1.5
169,055 - GFF160 0.14 +0.5
169,055 - GFF160 0.14 -0.1
169,055 - GFF160 0.14 -1.2
169,055 - GFF160 0.14 -0.8
169,055 - GFF160 0.14 +0.6
169,055 - GFF160 0.14 -1.1
169,204 + GFF160 0.22 -0.7
169,246 + GFF160 0.24 -0.5
169,247 - GFF160 0.24 -0.0
169,258 + GFF160 0.25 -0.5
169,259 - GFF160 0.25 -1.1
169,259 - GFF160 0.25 -0.8
169,269 + GFF160 0.25 -0.9
169,271 - GFF160 0.25 +0.1
169,300 + GFF160 0.27 +0.1
169,300 + GFF160 0.27 -0.1
169,301 - GFF160 0.27 -0.1
169,499 + GFF160 0.37 +1.1
169,500 - GFF160 0.37 -0.6
169,537 + GFF160 0.39 -0.5
169,538 - GFF160 0.39 -0.7
169,541 - GFF160 0.39 +0.1
169,541 - GFF160 0.39 +0.3
169,670 - GFF160 0.46 +0.5
169,780 + GFF160 0.52 +0.1
169,780 + GFF160 0.52 -0.6
169,789 + GFF160 0.52 +0.4
169,789 + GFF160 0.52 -1.4
169,790 - GFF160 0.52 -0.5
169,832 - GFF160 0.54 -0.4
169,832 - GFF160 0.54 -0.6
169,832 - GFF160 0.54 -1.2
169,832 - GFF160 0.54 -0.7
169,861 + GFF160 0.56 -0.4
169,891 + GFF160 0.57 -0.6
169,946 - GFF160 0.60 -1.8
170,023 + GFF160 0.64 +0.1
170,027 - GFF160 0.64 -0.5
170,027 - GFF160 0.64 +0.5
170,317 + GFF160 0.79 -0.1
170,317 + GFF160 0.79 -1.0
170,318 - GFF160 0.79 -0.6
170,318 - GFF160 0.79 -0.5
170,551 + -0.5
170,552 - -1.1
170,552 - -1.3
170,647 + -1.2
170,648 - -1.0
170,648 - -0.4
170,648 - -0.2
170,659 + -1.0
170,677 + -0.4
170,677 + -0.7
170,710 + -0.5
170,859 + -0.3
170,860 - +1.1
170,860 - -0.1
170,860 - +0.7
170,907 + -0.0
170,984 - +0.2
170,985 + +0.3

Or see this region's nucleotide sequence