Strain Fitness in Xanthobacter sp. DMC5 around GFF1598

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1597 and GFF1598 are separated by 17 nucleotidesGFF1598 and GFF1599 are separated by 188 nucleotidesGFF1599 and GFF1600 overlap by 8 nucleotides GFF1597 - Muconate cycloisomerase 1, at 247,263 to 248,414 GFF1597 GFF1598 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, at 248,432 to 249,307 GFF1598 GFF1599 - hypothetical protein, at 249,496 to 249,891 GFF1599 GFF1600 - 2-(hydroxymethyl)glutarate dehydrogenase, at 249,884 to 250,780 GFF1600 Position (kb) 248 249 250Strain fitness (log2 ratio) -1 0 1 2at 247.529 kb on + strand, within GFF1597at 247.529 kb on + strand, within GFF1597at 247.530 kb on - strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.776 kb on + strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.777 kb on - strand, within GFF1597at 247.850 kb on + strand, within GFF1597at 247.887 kb on - strand, within GFF1597at 247.892 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.965 kb on + strand, within GFF1597at 247.966 kb on - strand, within GFF1597at 247.966 kb on - strand, within GFF1597at 248.166 kb on + strand, within GFF1597at 248.167 kb on - strand, within GFF1597at 248.167 kb on - strand, within GFF1597at 248.214 kb on - strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.278 kb on + strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.279 kb on - strand, within GFF1597at 248.529 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.703 kb on + strand, within GFF1598at 248.704 kb on - strand, within GFF1598at 248.704 kb on - strand, within GFF1598at 248.753 kb on + strand, within GFF1598at 248.754 kb on - strand, within GFF1598at 248.754 kb on - strand, within GFF1598at 248.809 kb on + strand, within GFF1598at 248.810 kb on - strand, within GFF1598at 248.844 kb on + strand, within GFF1598at 248.845 kb on - strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.964 kb on - strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.038 kb on - strand, within GFF1598at 249.105 kb on + strand, within GFF1598at 249.270 kb on + strandat 249.270 kb on + strandat 249.409 kb on - strandat 249.438 kb on - strandat 249.438 kb on - strandat 249.462 kb on - strandat 249.474 kb on + strandat 249.475 kb on - strandat 249.475 kb on - strandat 249.495 kb on + strandat 249.496 kb on - strandat 249.496 kb on - strandat 249.496 kb on - strandat 249.571 kb on + strand, within GFF1599at 249.571 kb on + strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.797 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.974 kb on + strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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247,529 + GFF1597 0.23 +0.0
247,529 + GFF1597 0.23 -0.1
247,530 - GFF1597 0.23 +0.5
247,776 + GFF1597 0.45 -0.8
247,776 + GFF1597 0.45 +0.3
247,776 + GFF1597 0.45 +0.3
247,776 + GFF1597 0.45 +0.7
247,776 + GFF1597 0.45 +0.2
247,777 - GFF1597 0.45 -0.7
247,777 - GFF1597 0.45 -0.4
247,777 - GFF1597 0.45 -0.4
247,777 - GFF1597 0.45 -0.1
247,777 - GFF1597 0.45 +0.2
247,850 + GFF1597 0.51 +0.2
247,887 - GFF1597 0.54 -0.3
247,892 + GFF1597 0.55 -0.2
247,965 + GFF1597 0.61 +0.4
247,965 + GFF1597 0.61 +0.6
247,965 + GFF1597 0.61 +0.5
247,966 - GFF1597 0.61 -0.5
247,966 - GFF1597 0.61 -0.1
248,166 + GFF1597 0.78 -0.4
248,167 - GFF1597 0.78 -0.3
248,167 - GFF1597 0.78 +0.4
248,214 - GFF1597 0.83 -0.9
248,278 + GFF1597 0.88 -0.1
248,278 + GFF1597 0.88 +0.1
248,278 + GFF1597 0.88 -0.5
248,279 - GFF1597 0.88 -0.5
248,279 - GFF1597 0.88 -1.0
248,279 - GFF1597 0.88 +0.1
248,279 - GFF1597 0.88 -0.3
248,529 + GFF1598 0.11 +0.4
248,637 + GFF1598 0.23 -0.3
248,637 + GFF1598 0.23 -0.6
248,637 + GFF1598 0.23 +0.2
248,637 + GFF1598 0.23 +0.1
248,637 + GFF1598 0.23 +0.4
248,637 + GFF1598 0.23 +0.1
248,638 - GFF1598 0.24 +0.5
248,638 - GFF1598 0.24 +0.2
248,638 - GFF1598 0.24 -0.7
248,703 + GFF1598 0.31 +0.1
248,704 - GFF1598 0.31 -0.6
248,704 - GFF1598 0.31 +0.3
248,753 + GFF1598 0.37 +0.3
248,754 - GFF1598 0.37 -0.1
248,754 - GFF1598 0.37 +0.2
248,809 + GFF1598 0.43 +0.8
248,810 - GFF1598 0.43 -0.2
248,844 + GFF1598 0.47 -0.0
248,845 - GFF1598 0.47 -0.3
248,963 + GFF1598 0.61 -0.3
248,963 + GFF1598 0.61 +0.3
248,964 - GFF1598 0.61 +0.2
249,037 + GFF1598 0.69 -1.6
249,037 + GFF1598 0.69 -0.3
249,038 - GFF1598 0.69 -0.3
249,105 + GFF1598 0.77 +0.6
249,270 + +0.5
249,270 + -0.3
249,409 - -0.0
249,438 - -0.1
249,438 - -0.8
249,462 - +0.8
249,474 + +0.0
249,475 - -0.5
249,475 - +0.2
249,495 + +0.1
249,496 - +0.3
249,496 - -0.5
249,496 - +0.3
249,571 + GFF1599 0.19 -0.5
249,571 + GFF1599 0.19 +0.2
249,572 - GFF1599 0.19 -1.1
249,572 - GFF1599 0.19 +0.2
249,572 - GFF1599 0.19 +0.3
249,572 - GFF1599 0.19 +0.6
249,797 + GFF1599 0.76 +0.0
249,817 + GFF1599 0.81 -0.0
249,817 + GFF1599 0.81 -0.1
249,817 + GFF1599 0.81 -0.5
249,817 + GFF1599 0.81 +0.3
249,818 - GFF1599 0.81 +0.5
249,818 - GFF1599 0.81 -0.4
249,818 - GFF1599 0.81 -0.3
249,818 - GFF1599 0.81 -0.0
249,818 - GFF1599 0.81 +0.6
249,818 - GFF1599 0.81 +0.4
249,818 - GFF1599 0.81 +0.1
249,818 - GFF1599 0.81 -0.1
249,974 + GFF1600 0.10 -0.2
249,975 - GFF1600 0.10 -0.1
249,975 - GFF1600 0.10 +1.0
250,241 - GFF1600 0.40 +0.4
250,241 - GFF1600 0.40 +0.4
250,241 - GFF1600 0.40 +1.8
250,241 - GFF1600 0.40 +0.3
250,241 - GFF1600 0.40 -0.2
250,241 - GFF1600 0.40 +0.1

Or see this region's nucleotide sequence