Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1590 and GFF1591 are separated by 42 nucleotides GFF1591 and GFF1592 are separated by 33 nucleotides
GFF1590 - Caffeyl-CoA reductase-Etf complex subunit CarC, at 237,041 to 238,105
GFF1590
GFF1591 - Crotonyl-CoA hydratase, at 238,148 to 238,954
GFF1591
GFF1592 - HTH-type transcriptional repressor NanR, at 238,988 to 240,529
GFF1592
Position (kb) 238
239 Strain fitness (log2 ratio) -1
0
1 at 237.392 kb on + strand, within GFF1590 at 237.392 kb on + strand, within GFF1590 at 237.393 kb on - strand, within GFF1590 at 237.578 kb on - strand, within GFF1590 at 237.758 kb on + strand, within GFF1590 at 237.759 kb on - strand, within GFF1590 at 237.759 kb on - strand, within GFF1590 at 237.935 kb on + strand, within GFF1590 at 237.935 kb on + strand, within GFF1590 at 237.936 kb on - strand, within GFF1590 at 237.936 kb on - strand, within GFF1590 at 237.936 kb on - strand, within GFF1590 at 237.936 kb on - strand, within GFF1590 at 238.010 kb on + strand at 238.028 kb on + strand at 238.028 kb on + strand at 238.029 kb on - strand at 238.029 kb on - strand at 238.029 kb on - strand at 238.029 kb on - strand at 238.029 kb on - strand at 238.029 kb on - strand at 238.289 kb on + strand, within GFF1591 at 238.289 kb on + strand, within GFF1591 at 238.635 kb on - strand, within GFF1591 at 238.754 kb on + strand, within GFF1591 at 238.754 kb on + strand, within GFF1591 at 238.754 kb on + strand, within GFF1591 at 238.754 kb on + strand, within GFF1591 at 238.754 kb on + strand, within GFF1591 at 238.755 kb on - strand, within GFF1591 at 238.755 kb on - strand, within GFF1591 at 238.755 kb on - strand, within GFF1591 at 239.037 kb on + strand at 239.037 kb on + strand at 239.179 kb on + strand, within GFF1592 at 239.181 kb on + strand, within GFF1592 at 239.182 kb on - strand, within GFF1592 at 239.191 kb on - strand, within GFF1592 at 239.199 kb on + strand, within GFF1592 at 239.226 kb on + strand, within GFF1592 at 239.227 kb on - strand, within GFF1592 at 239.407 kb on - strand, within GFF1592 at 239.770 kb on + strand, within GFF1592 at 239.771 kb on - strand, within GFF1592
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 237,392 + GFF1590 0.33 +0.1 237,392 + GFF1590 0.33 -0.4 237,393 - GFF1590 0.33 +0.2 237,578 - GFF1590 0.50 -0.5 237,758 + GFF1590 0.67 +0.2 237,759 - GFF1590 0.67 -0.8 237,759 - GFF1590 0.67 +1.2 237,935 + GFF1590 0.84 -1.4 237,935 + GFF1590 0.84 +0.7 237,936 - GFF1590 0.84 -0.1 237,936 - GFF1590 0.84 +0.2 237,936 - GFF1590 0.84 +0.4 237,936 - GFF1590 0.84 -0.9 238,010 + -0.2 238,028 + -0.0 238,028 + +0.2 238,029 - -0.5 238,029 - +0.0 238,029 - +0.9 238,029 - -0.2 238,029 - +0.1 238,029 - +0.6 238,289 + GFF1591 0.17 +0.5 238,289 + GFF1591 0.17 -0.2 238,635 - GFF1591 0.60 -0.3 238,754 + GFF1591 0.75 +0.1 238,754 + GFF1591 0.75 -0.7 238,754 + GFF1591 0.75 +0.7 238,754 + GFF1591 0.75 -0.2 238,754 + GFF1591 0.75 -0.9 238,755 - GFF1591 0.75 -0.5 238,755 - GFF1591 0.75 +0.5 238,755 - GFF1591 0.75 -0.0 239,037 + -0.1 239,037 + -1.4 239,179 + GFF1592 0.12 +0.6 239,181 + GFF1592 0.13 -0.1 239,182 - GFF1592 0.13 +0.2 239,191 - GFF1592 0.13 -0.0 239,199 + GFF1592 0.14 -0.3 239,226 + GFF1592 0.15 -0.8 239,227 - GFF1592 0.15 +0.6 239,407 - GFF1592 0.27 -0.2 239,770 + GFF1592 0.51 +0.4 239,771 - GFF1592 0.51 -0.6
Or see this region's nucleotide sequence