Strain Fitness in Xanthobacter sp. DMC5 around GFF1589

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1588 and GFF1589 are separated by 9 nucleotidesGFF1589 and GFF1590 are separated by 6 nucleotides GFF1588 - 2-haloacrylate reductase, at 234,860 to 235,846 GFF1588 GFF1589 - Putative acyl-CoA dehydrogenase FadE17, at 235,856 to 237,034 GFF1589 GFF1590 - Caffeyl-CoA reductase-Etf complex subunit CarC, at 237,041 to 238,105 GFF1590 Position (kb) 235 236 237 238Strain fitness (log2 ratio) -2 -1 0 1at 234.865 kb on + strandat 234.866 kb on - strandat 234.866 kb on - strandat 234.866 kb on - strandat 234.866 kb on - strandat 235.004 kb on + strand, within GFF1588at 235.004 kb on + strand, within GFF1588at 235.004 kb on + strand, within GFF1588at 235.004 kb on + strand, within GFF1588at 235.004 kb on + strand, within GFF1588at 235.005 kb on - strand, within GFF1588at 235.005 kb on - strand, within GFF1588at 235.127 kb on + strand, within GFF1588at 235.128 kb on - strand, within GFF1588at 235.128 kb on - strand, within GFF1588at 235.128 kb on - strand, within GFF1588at 235.151 kb on + strand, within GFF1588at 235.151 kb on + strand, within GFF1588at 235.152 kb on - strand, within GFF1588at 235.442 kb on + strand, within GFF1588at 235.442 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.508 kb on + strand, within GFF1588at 235.509 kb on - strand, within GFF1588at 235.509 kb on - strand, within GFF1588at 236.045 kb on + strand, within GFF1589at 236.046 kb on - strand, within GFF1589at 236.046 kb on - strand, within GFF1589at 236.046 kb on - strand, within GFF1589at 236.046 kb on - strand, within GFF1589at 236.138 kb on + strand, within GFF1589at 236.138 kb on + strand, within GFF1589at 236.139 kb on - strand, within GFF1589at 236.160 kb on - strand, within GFF1589at 236.160 kb on - strand, within GFF1589at 236.192 kb on + strand, within GFF1589at 236.193 kb on - strand, within GFF1589at 236.193 kb on - strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.308 kb on + strand, within GFF1589at 236.309 kb on - strand, within GFF1589at 236.309 kb on - strand, within GFF1589at 236.310 kb on - strand, within GFF1589at 236.357 kb on + strand, within GFF1589at 236.357 kb on + strand, within GFF1589at 236.357 kb on + strand, within GFF1589at 236.358 kb on - strand, within GFF1589at 236.686 kb on - strand, within GFF1589at 236.864 kb on + strand, within GFF1589at 236.866 kb on - strand, within GFF1589at 236.975 kb on + strandat 236.975 kb on + strandat 236.975 kb on + strandat 236.976 kb on - strandat 236.976 kb on - strandat 236.976 kb on - strandat 236.976 kb on - strandat 236.976 kb on - strandat 236.976 kb on - strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.116 kb on + strandat 237.117 kb on - strandat 237.117 kb on - strandat 237.117 kb on - strandat 237.117 kb on - strandat 237.117 kb on - strandat 237.392 kb on + strand, within GFF1590at 237.392 kb on + strand, within GFF1590at 237.393 kb on - strand, within GFF1590at 237.578 kb on - strand, within GFF1590at 237.758 kb on + strand, within GFF1590at 237.759 kb on - strand, within GFF1590at 237.759 kb on - strand, within GFF1590at 237.935 kb on + strand, within GFF1590at 237.935 kb on + strand, within GFF1590at 237.936 kb on - strand, within GFF1590at 237.936 kb on - strand, within GFF1590at 237.936 kb on - strand, within GFF1590at 237.936 kb on - strand, within GFF1590at 238.010 kb on + strandat 238.028 kb on + strandat 238.028 kb on + strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.029 kb on - strandat 238.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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234,865 + -0.3
234,866 - -0.2
234,866 - -1.2
234,866 - +0.2
234,866 - -0.5
235,004 + GFF1588 0.15 +0.1
235,004 + GFF1588 0.15 -0.8
235,004 + GFF1588 0.15 -0.3
235,004 + GFF1588 0.15 -1.1
235,004 + GFF1588 0.15 -1.2
235,005 - GFF1588 0.15 -0.3
235,005 - GFF1588 0.15 -0.3
235,127 + GFF1588 0.27 +0.6
235,128 - GFF1588 0.27 +0.2
235,128 - GFF1588 0.27 +0.8
235,128 - GFF1588 0.27 +0.5
235,151 + GFF1588 0.29 -1.3
235,151 + GFF1588 0.29 +0.2
235,152 - GFF1588 0.30 +0.7
235,442 + GFF1588 0.59 +0.5
235,442 + GFF1588 0.59 +1.3
235,508 + GFF1588 0.66 -0.3
235,508 + GFF1588 0.66 +0.5
235,508 + GFF1588 0.66 -0.6
235,508 + GFF1588 0.66 -0.5
235,508 + GFF1588 0.66 +0.5
235,508 + GFF1588 0.66 +0.2
235,509 - GFF1588 0.66 -0.2
235,509 - GFF1588 0.66 -1.1
236,045 + GFF1589 0.16 +0.2
236,046 - GFF1589 0.16 +0.7
236,046 - GFF1589 0.16 -0.5
236,046 - GFF1589 0.16 -0.3
236,046 - GFF1589 0.16 -0.9
236,138 + GFF1589 0.24 +0.3
236,138 + GFF1589 0.24 +0.7
236,139 - GFF1589 0.24 -0.6
236,160 - GFF1589 0.26 +0.2
236,160 - GFF1589 0.26 +0.8
236,192 + GFF1589 0.28 +0.2
236,193 - GFF1589 0.29 +0.6
236,193 - GFF1589 0.29 -0.9
236,308 + GFF1589 0.38 +0.5
236,308 + GFF1589 0.38 +0.5
236,308 + GFF1589 0.38 -0.1
236,308 + GFF1589 0.38 -2.3
236,308 + GFF1589 0.38 +1.1
236,308 + GFF1589 0.38 +0.2
236,309 - GFF1589 0.38 -0.5
236,309 - GFF1589 0.38 -0.5
236,310 - GFF1589 0.39 +0.0
236,357 + GFF1589 0.42 +0.1
236,357 + GFF1589 0.42 +0.4
236,357 + GFF1589 0.42 +0.8
236,358 - GFF1589 0.43 -0.5
236,686 - GFF1589 0.70 -0.5
236,864 + GFF1589 0.85 +0.0
236,866 - GFF1589 0.86 -0.2
236,975 + -0.5
236,975 + +0.0
236,975 + -0.3
236,976 - -0.4
236,976 - +0.2
236,976 - -0.8
236,976 - -0.6
236,976 - -0.8
236,976 - +0.2
237,116 + +0.1
237,116 + -1.0
237,116 + +0.4
237,116 + -0.8
237,116 + +0.4
237,116 + -0.4
237,116 + +0.0
237,116 + +0.7
237,116 + -0.2
237,117 - +0.1
237,117 - +0.1
237,117 - +0.1
237,117 - -0.5
237,117 - +0.5
237,392 + GFF1590 0.33 +0.1
237,392 + GFF1590 0.33 -0.4
237,393 - GFF1590 0.33 +0.2
237,578 - GFF1590 0.50 -0.5
237,758 + GFF1590 0.67 +0.2
237,759 - GFF1590 0.67 -0.8
237,759 - GFF1590 0.67 +1.2
237,935 + GFF1590 0.84 -1.4
237,935 + GFF1590 0.84 +0.7
237,936 - GFF1590 0.84 -0.1
237,936 - GFF1590 0.84 +0.2
237,936 - GFF1590 0.84 +0.4
237,936 - GFF1590 0.84 -0.9
238,010 + -0.2
238,028 + -0.0
238,028 + +0.2
238,029 - -0.5
238,029 - +0.0
238,029 - +0.9
238,029 - -0.2
238,029 - +0.1
238,029 - +0.6

Or see this region's nucleotide sequence