Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1558 and GFF1559 are separated by 140 nucleotides GFF1559 and GFF1560 are separated by 70 nucleotides GFF1560 and GFF1561 are separated by 51 nucleotides
GFF1558 - putative FAD-linked oxidoreductase, at 197,829 to 199,334
GFF1558
GFF1559 - HTH-type transcriptional repressor CytR, at 199,475 to 200,518
GFF1559
GFF1560 - hypothetical protein, at 200,589 to 200,891
GFF1560
GFF1561 - Acid-activated urea channel, at 200,943 to 201,461
GFF1561
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1 at 198.775 kb on + strand, within GFF1558 at 198.811 kb on - strand, within GFF1558 at 199.189 kb on + strand at 199.189 kb on + strand at 199.190 kb on - strand at 199.190 kb on - strand at 199.334 kb on + strand at 199.335 kb on - strand at 199.635 kb on + strand, within GFF1559 at 199.636 kb on - strand, within GFF1559 at 199.698 kb on - strand, within GFF1559 at 199.698 kb on - strand, within GFF1559 at 199.698 kb on - strand, within GFF1559 at 199.818 kb on + strand, within GFF1559 at 200.334 kb on + strand, within GFF1559 at 200.334 kb on + strand, within GFF1559 at 200.334 kb on + strand, within GFF1559 at 200.335 kb on - strand, within GFF1559 at 200.335 kb on - strand, within GFF1559 at 200.335 kb on - strand, within GFF1559 at 200.335 kb on - strand, within GFF1559 at 200.431 kb on + strand at 200.431 kb on + strand at 200.431 kb on + strand at 200.693 kb on + strand, within GFF1560 at 200.693 kb on + strand, within GFF1560 at 200.693 kb on + strand, within GFF1560 at 200.694 kb on - strand, within GFF1560 at 200.694 kb on - strand, within GFF1560 at 200.694 kb on - strand, within GFF1560 at 200.876 kb on - strand at 200.876 kb on - strand at 200.881 kb on + strand at 200.881 kb on + strand at 200.881 kb on + strand at 200.881 kb on + strand at 200.882 kb on - strand at 200.882 kb on - strand at 200.882 kb on - strand at 201.067 kb on + strand, within GFF1561 at 201.067 kb on + strand, within GFF1561 at 201.068 kb on - strand, within GFF1561 at 201.068 kb on - strand, within GFF1561 at 201.232 kb on + strand, within GFF1561 at 201.232 kb on + strand, within GFF1561 at 201.232 kb on + strand, within GFF1561 at 201.232 kb on + strand, within GFF1561 at 201.233 kb on - strand, within GFF1561 at 201.247 kb on + strand, within GFF1561 at 201.247 kb on + strand, within GFF1561 at 201.247 kb on + strand, within GFF1561 at 201.247 kb on + strand, within GFF1561 at 201.247 kb on + strand, within GFF1561 at 201.248 kb on - strand, within GFF1561 at 201.248 kb on - strand, within GFF1561 at 201.322 kb on + strand, within GFF1561 at 201.323 kb on - strand, within GFF1561 at 201.436 kb on + strand at 201.437 kb on - strand at 201.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 198,775 + GFF1558 0.63 -0.8 198,811 - GFF1558 0.65 -0.1 199,189 + -0.4 199,189 + +0.7 199,190 - +0.4 199,190 - -0.2 199,334 + -0.3 199,335 - +0.4 199,635 + GFF1559 0.15 +0.1 199,636 - GFF1559 0.15 -0.9 199,698 - GFF1559 0.21 -0.3 199,698 - GFF1559 0.21 -0.0 199,698 - GFF1559 0.21 -1.5 199,818 + GFF1559 0.33 -0.2 200,334 + GFF1559 0.82 -2.3 200,334 + GFF1559 0.82 -1.3 200,334 + GFF1559 0.82 -1.6 200,335 - GFF1559 0.82 -1.5 200,335 - GFF1559 0.82 -1.1 200,335 - GFF1559 0.82 -0.5 200,335 - GFF1559 0.82 -0.0 200,431 + +0.6 200,431 + -1.1 200,431 + +0.8 200,693 + GFF1560 0.34 +0.4 200,693 + GFF1560 0.34 +0.3 200,693 + GFF1560 0.34 +0.1 200,694 - GFF1560 0.35 +1.6 200,694 - GFF1560 0.35 -0.9 200,694 - GFF1560 0.35 -0.9 200,876 - +0.1 200,876 - -1.0 200,881 + -0.1 200,881 + +0.6 200,881 + +0.5 200,881 + -0.7 200,882 - -0.3 200,882 - -0.0 200,882 - -0.6 201,067 + GFF1561 0.24 +0.0 201,067 + GFF1561 0.24 -0.6 201,068 - GFF1561 0.24 +1.5 201,068 - GFF1561 0.24 +0.1 201,232 + GFF1561 0.56 -0.4 201,232 + GFF1561 0.56 +0.8 201,232 + GFF1561 0.56 -0.5 201,232 + GFF1561 0.56 +0.7 201,233 - GFF1561 0.56 +1.0 201,247 + GFF1561 0.59 -0.0 201,247 + GFF1561 0.59 -0.0 201,247 + GFF1561 0.59 +0.4 201,247 + GFF1561 0.59 -0.4 201,247 + GFF1561 0.59 +0.4 201,248 - GFF1561 0.59 +0.0 201,248 - GFF1561 0.59 -0.8 201,322 + GFF1561 0.73 -0.1 201,323 - GFF1561 0.73 +0.4 201,436 + +0.4 201,437 - +0.2 201,466 + -1.3
Or see this region's nucleotide sequence