Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1490 and GFF1491 are separated by 63 nucleotides GFF1491 and GFF1492 are separated by 103 nucleotides GFF1492 and GFF1493 overlap by 17 nucleotides
GFF1490 - hypothetical protein, at 129,660 to 130,601
GFF1490
GFF1491 - hypothetical protein, at 130,665 to 130,853
GFF1491
GFF1492 - hypothetical protein, at 130,957 to 131,586
GFF1492
GFF1493 - hypothetical protein, at 131,570 to 132,523
GFF1493
Position (kb) 130
131 Strain fitness (log2 ratio) -1
0
1 at 129.856 kb on + strand, within GFF1490 at 129.857 kb on - strand, within GFF1490 at 129.990 kb on + strand, within GFF1490 at 129.991 kb on - strand, within GFF1490 at 130.297 kb on - strand, within GFF1490 at 130.315 kb on + strand, within GFF1490 at 130.315 kb on + strand, within GFF1490 at 130.316 kb on - strand, within GFF1490 at 130.483 kb on - strand, within GFF1490 at 130.647 kb on - strand at 130.684 kb on - strand, within GFF1491 at 130.729 kb on - strand, within GFF1491 at 130.729 kb on - strand, within GFF1491 at 130.764 kb on + strand, within GFF1491 at 130.765 kb on - strand, within GFF1491 at 130.765 kb on - strand, within GFF1491 at 130.828 kb on - strand, within GFF1491 at 130.828 kb on - strand, within GFF1491 at 131.258 kb on + strand, within GFF1492 at 131.259 kb on - strand, within GFF1492 at 131.437 kb on + strand, within GFF1492 at 131.438 kb on - strand, within GFF1492 at 131.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 129,856 + GFF1490 0.21 +0.3 129,857 - GFF1490 0.21 -0.5 129,990 + GFF1490 0.35 +0.0 129,991 - GFF1490 0.35 -0.7 130,297 - GFF1490 0.68 +0.3 130,315 + GFF1490 0.70 +0.6 130,315 + GFF1490 0.70 +0.7 130,316 - GFF1490 0.70 +0.2 130,483 - GFF1490 0.87 +0.1 130,647 - +0.6 130,684 - GFF1491 0.10 +0.5 130,729 - GFF1491 0.34 +1.2 130,729 - GFF1491 0.34 -0.0 130,764 + GFF1491 0.52 +0.2 130,765 - GFF1491 0.53 -0.6 130,765 - GFF1491 0.53 +0.2 130,828 - GFF1491 0.86 +0.5 130,828 - GFF1491 0.86 +0.4 131,258 + GFF1492 0.48 +0.7 131,259 - GFF1492 0.48 +0.4 131,437 + GFF1492 0.76 -0.4 131,438 - GFF1492 0.76 +0.9 131,607 + -0.6
Or see this region's nucleotide sequence