Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF145 and GFF146 are separated by 3 nucleotides GFF146 and GFF147 are separated by 149 nucleotides GFF147 and GFF148 are separated by 4 nucleotides
GFF145 - Soluble epoxide hydrolase, at 155,886 to 156,779
GFF145
GFF146 - hypothetical protein, at 156,783 to 157,352
GFF146
GFF147 - hypothetical protein, at 157,502 to 157,771
GFF147
GFF148 - DNA damage-inducible protein F, at 157,776 to 159,098
GFF148
Position (kb) 156
157
158 Strain fitness (log2 ratio) -1
0
1
2 at 155.807 kb on - strand at 156.093 kb on - strand, within GFF145 at 156.093 kb on - strand, within GFF145 at 156.093 kb on - strand, within GFF145 at 156.421 kb on - strand, within GFF145 at 156.421 kb on - strand, within GFF145 at 156.421 kb on - strand, within GFF145 at 156.489 kb on + strand, within GFF145 at 156.489 kb on + strand, within GFF145 at 156.490 kb on - strand, within GFF145 at 156.777 kb on + strand at 157.108 kb on + strand, within GFF146 at 157.203 kb on + strand, within GFF146 at 157.436 kb on + strand at 157.466 kb on + strand at 157.467 kb on - strand at 157.471 kb on + strand at 157.703 kb on + strand, within GFF147 at 157.804 kb on + strand at 157.805 kb on - strand at 157.805 kb on - strand at 158.178 kb on + strand, within GFF148 at 158.178 kb on + strand, within GFF148 at 158.179 kb on - strand, within GFF148 at 158.179 kb on - strand, within GFF148 at 158.179 kb on - strand, within GFF148 at 158.181 kb on + strand, within GFF148 at 158.181 kb on + strand, within GFF148 at 158.223 kb on + strand, within GFF148 at 158.224 kb on - strand, within GFF148
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 155,807 - +0.6 156,093 - GFF145 0.23 +0.7 156,093 - GFF145 0.23 -0.2 156,093 - GFF145 0.23 -1.1 156,421 - GFF145 0.60 -0.4 156,421 - GFF145 0.60 -0.0 156,421 - GFF145 0.60 -0.4 156,489 + GFF145 0.67 -0.3 156,489 + GFF145 0.67 -0.6 156,490 - GFF145 0.68 -0.4 156,777 + +0.6 157,108 + GFF146 0.57 -1.0 157,203 + GFF146 0.74 -0.5 157,436 + -0.5 157,466 + -0.2 157,467 - +0.2 157,471 + +0.3 157,703 + GFF147 0.74 -0.3 157,804 + +0.3 157,805 - -0.1 157,805 - +0.4 158,178 + GFF148 0.30 +0.3 158,178 + GFF148 0.30 +1.9 158,179 - GFF148 0.30 -0.2 158,179 - GFF148 0.30 +0.1 158,179 - GFF148 0.30 +1.6 158,181 + GFF148 0.31 +0.3 158,181 + GFF148 0.31 +0.4 158,223 + GFF148 0.34 +0.5 158,224 - GFF148 0.34 +0.5
Or see this region's nucleotide sequence