Strain Fitness in Xanthobacter sp. DMC5 around GFF1455

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1454 and GFF1455 overlap by 4 nucleotidesGFF1455 and GFF1456 overlap by 1 nucleotides GFF1454 - Glucosamine kinase, at 85,151 to 88,432 GFF1454 GFF1455 - 1,4-alpha-glucan branching enzyme GlgB, at 88,429 to 90,648 GFF1455 GFF1456 - Glycogen operon protein GlgX, at 90,648 to 92,750 GFF1456 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -1 0 1at 87.572 kb on + strand, within GFF1454at 87.572 kb on + strand, within GFF1454at 87.572 kb on + strand, within GFF1454at 87.573 kb on - strand, within GFF1454at 87.680 kb on + strand, within GFF1454at 87.680 kb on + strand, within GFF1454at 87.681 kb on - strand, within GFF1454at 87.681 kb on - strand, within GFF1454at 88.130 kb on + strandat 88.131 kb on - strandat 88.131 kb on - strandat 88.239 kb on - strandat 88.328 kb on + strandat 88.328 kb on + strandat 88.329 kb on - strandat 88.340 kb on + strandat 88.567 kb on + strandat 88.568 kb on - strandat 88.744 kb on + strand, within GFF1455at 88.917 kb on - strand, within GFF1455at 89.012 kb on - strand, within GFF1455at 89.017 kb on + strand, within GFF1455at 89.018 kb on - strand, within GFF1455at 89.018 kb on - strand, within GFF1455at 89.018 kb on - strand, within GFF1455at 89.018 kb on - strand, within GFF1455at 89.201 kb on - strand, within GFF1455at 89.201 kb on - strand, within GFF1455at 89.201 kb on - strand, within GFF1455at 89.288 kb on - strand, within GFF1455at 89.533 kb on + strand, within GFF1455at 89.587 kb on + strand, within GFF1455at 89.587 kb on + strand, within GFF1455at 89.587 kb on + strand, within GFF1455at 89.587 kb on + strand, within GFF1455at 89.587 kb on + strand, within GFF1455at 89.588 kb on - strand, within GFF1455at 89.588 kb on - strand, within GFF1455at 89.588 kb on - strand, within GFF1455at 89.900 kb on - strand, within GFF1455at 89.960 kb on - strand, within GFF1455at 90.001 kb on + strand, within GFF1455at 90.001 kb on + strand, within GFF1455at 90.287 kb on - strand, within GFF1455at 90.287 kb on - strand, within GFF1455at 90.451 kb on + strandat 90.515 kb on - strandat 90.870 kb on + strand, within GFF1456at 90.894 kb on + strand, within GFF1456at 90.948 kb on + strand, within GFF1456at 91.032 kb on + strand, within GFF1456at 91.032 kb on + strand, within GFF1456at 91.143 kb on + strand, within GFF1456at 91.143 kb on + strand, within GFF1456at 91.143 kb on + strand, within GFF1456at 91.144 kb on - strand, within GFF1456at 91.144 kb on - strand, within GFF1456at 91.144 kb on - strand, within GFF1456at 91.308 kb on + strand, within GFF1456at 91.309 kb on - strand, within GFF1456at 91.336 kb on - strand, within GFF1456at 91.344 kb on + strand, within GFF1456at 91.380 kb on + strand, within GFF1456at 91.381 kb on - strand, within GFF1456at 91.381 kb on - strand, within GFF1456at 91.381 kb on - strand, within GFF1456at 91.467 kb on + strand, within GFF1456at 91.467 kb on + strand, within GFF1456at 91.467 kb on + strand, within GFF1456at 91.536 kb on + strand, within GFF1456at 91.537 kb on - strand, within GFF1456at 91.537 kb on - strand, within GFF1456at 91.566 kb on + strand, within GFF1456

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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87,572 + GFF1454 0.74 -0.6
87,572 + GFF1454 0.74 -0.2
87,572 + GFF1454 0.74 +0.6
87,573 - GFF1454 0.74 -0.2
87,680 + GFF1454 0.77 +0.2
87,680 + GFF1454 0.77 -0.3
87,681 - GFF1454 0.77 -0.1
87,681 - GFF1454 0.77 -0.9
88,130 + -0.5
88,131 - -0.3
88,131 - +0.5
88,239 - +0.4
88,328 + -0.1
88,328 + -1.5
88,329 - +0.5
88,340 + +0.2
88,567 + +0.2
88,568 - -0.7
88,744 + GFF1455 0.14 -0.8
88,917 - GFF1455 0.22 -1.5
89,012 - GFF1455 0.26 -0.6
89,017 + GFF1455 0.26 -0.1
89,018 - GFF1455 0.27 -0.6
89,018 - GFF1455 0.27 -1.1
89,018 - GFF1455 0.27 +1.0
89,018 - GFF1455 0.27 +0.2
89,201 - GFF1455 0.35 -0.1
89,201 - GFF1455 0.35 +0.5
89,201 - GFF1455 0.35 +0.2
89,288 - GFF1455 0.39 -0.3
89,533 + GFF1455 0.50 +0.7
89,587 + GFF1455 0.52 -1.1
89,587 + GFF1455 0.52 +0.7
89,587 + GFF1455 0.52 +0.7
89,587 + GFF1455 0.52 +0.6
89,587 + GFF1455 0.52 +0.1
89,588 - GFF1455 0.52 +0.8
89,588 - GFF1455 0.52 +0.2
89,588 - GFF1455 0.52 +1.2
89,900 - GFF1455 0.66 +1.1
89,960 - GFF1455 0.69 +1.4
90,001 + GFF1455 0.71 -1.0
90,001 + GFF1455 0.71 +0.7
90,287 - GFF1455 0.84 +0.5
90,287 - GFF1455 0.84 -0.2
90,451 + -1.3
90,515 - +0.8
90,870 + GFF1456 0.11 +0.2
90,894 + GFF1456 0.12 -1.3
90,948 + GFF1456 0.14 -0.8
91,032 + GFF1456 0.18 -0.0
91,032 + GFF1456 0.18 -0.4
91,143 + GFF1456 0.24 -1.0
91,143 + GFF1456 0.24 +0.1
91,143 + GFF1456 0.24 +0.4
91,144 - GFF1456 0.24 -0.5
91,144 - GFF1456 0.24 +1.1
91,144 - GFF1456 0.24 +1.1
91,308 + GFF1456 0.31 +1.2
91,309 - GFF1456 0.31 -1.3
91,336 - GFF1456 0.33 -0.6
91,344 + GFF1456 0.33 +0.2
91,380 + GFF1456 0.35 -0.1
91,381 - GFF1456 0.35 -0.5
91,381 - GFF1456 0.35 -1.7
91,381 - GFF1456 0.35 -0.2
91,467 + GFF1456 0.39 +0.2
91,467 + GFF1456 0.39 +0.3
91,467 + GFF1456 0.39 -0.1
91,536 + GFF1456 0.42 +0.2
91,537 - GFF1456 0.42 +0.7
91,537 - GFF1456 0.42 +0.7
91,566 + GFF1456 0.44 +0.1

Or see this region's nucleotide sequence