Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1428 and GFF1429 overlap by 1 nucleotides GFF1429 and GFF1430 are separated by 22 nucleotides GFF1430 and GFF1431 are separated by 263 nucleotides
GFF1428 - Acetate CoA-transferase subunit alpha, at 51,152 to 51,805
GFF1428
GFF1429 - Butyrate--acetoacetate CoA-transferase subunit B, at 51,805 to 52,494
GFF1429
GFF1430 - hypothetical protein, at 52,517 to 54,925
GFF1430
GFF1431 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxy late synthase, at 55,189 to 56,085
GFF1431
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -1
0
1
2 at 51.521 kb on - strand, within GFF1428 at 51.521 kb on - strand, within GFF1428 at 51.569 kb on + strand, within GFF1428 at 51.569 kb on + strand, within GFF1428 at 51.570 kb on - strand, within GFF1428 at 51.629 kb on + strand, within GFF1428 at 51.630 kb on - strand, within GFF1428 at 51.630 kb on - strand, within GFF1428 at 51.630 kb on - strand, within GFF1428 at 51.630 kb on - strand, within GFF1428 at 51.648 kb on - strand, within GFF1428 at 51.940 kb on + strand, within GFF1429 at 51.940 kb on + strand, within GFF1429 at 51.941 kb on - strand, within GFF1429 at 51.955 kb on + strand, within GFF1429 at 51.955 kb on + strand, within GFF1429 at 51.955 kb on + strand, within GFF1429 at 51.955 kb on + strand, within GFF1429 at 51.964 kb on + strand, within GFF1429 at 51.965 kb on - strand, within GFF1429 at 52.224 kb on + strand, within GFF1429 at 52.740 kb on + strand at 52.740 kb on + strand at 52.740 kb on + strand at 52.741 kb on - strand at 52.741 kb on - strand at 52.741 kb on - strand at 52.741 kb on - strand at 52.741 kb on - strand at 53.037 kb on + strand, within GFF1430 at 53.037 kb on + strand, within GFF1430 at 53.037 kb on + strand, within GFF1430 at 53.037 kb on + strand, within GFF1430 at 53.038 kb on - strand, within GFF1430 at 53.061 kb on + strand, within GFF1430 at 53.328 kb on + strand, within GFF1430 at 53.328 kb on + strand, within GFF1430 at 53.328 kb on + strand, within GFF1430 at 53.328 kb on + strand, within GFF1430 at 53.493 kb on + strand, within GFF1430 at 53.493 kb on + strand, within GFF1430 at 53.613 kb on + strand, within GFF1430 at 53.613 kb on + strand, within GFF1430 at 53.614 kb on - strand, within GFF1430 at 53.614 kb on - strand, within GFF1430 at 53.614 kb on - strand, within GFF1430 at 53.614 kb on - strand, within GFF1430 at 53.658 kb on + strand, within GFF1430 at 53.928 kb on + strand, within GFF1430 at 54.012 kb on + strand, within GFF1430 at 54.013 kb on - strand, within GFF1430 at 54.063 kb on + strand, within GFF1430 at 54.063 kb on + strand, within GFF1430 at 54.063 kb on + strand, within GFF1430 at 54.064 kb on - strand, within GFF1430 at 54.238 kb on - strand, within GFF1430 at 54.238 kb on - strand, within GFF1430 at 54.238 kb on - strand, within GFF1430 at 54.238 kb on - strand, within GFF1430 at 54.238 kb on - strand, within GFF1430 at 54.238 kb on - strand, within GFF1430 at 54.319 kb on - strand, within GFF1430 at 54.417 kb on + strand, within GFF1430 at 54.418 kb on - strand, within GFF1430 at 54.467 kb on - strand, within GFF1430 at 54.477 kb on + strand, within GFF1430 at 54.477 kb on + strand, within GFF1430 at 54.477 kb on + strand, within GFF1430 at 54.477 kb on + strand, within GFF1430 at 54.477 kb on + strand, within GFF1430 at 54.478 kb on - strand, within GFF1430 at 54.478 kb on - strand, within GFF1430 at 54.478 kb on - strand, within GFF1430 at 54.478 kb on - strand, within GFF1430 at 54.478 kb on - strand, within GFF1430 at 54.522 kb on + strand, within GFF1430 at 54.528 kb on + strand, within GFF1430 at 54.528 kb on + strand, within GFF1430 at 54.722 kb on - strand at 54.826 kb on + strand at 54.872 kb on + strand at 54.873 kb on - strand at 54.951 kb on + strand at 54.952 kb on - strand at 55.002 kb on + strand at 55.022 kb on - strand at 55.022 kb on - strand at 55.044 kb on + strand at 55.140 kb on - strand at 55.349 kb on + strand, within GFF1431 at 55.349 kb on + strand, within GFF1431 at 55.350 kb on - strand, within GFF1431 at 55.350 kb on - strand, within GFF1431 at 55.526 kb on + strand, within GFF1431 at 55.677 kb on + strand, within GFF1431 at 55.679 kb on + strand, within GFF1431 at 55.680 kb on - strand, within GFF1431 at 55.680 kb on - strand, within GFF1431 at 55.774 kb on + strand, within GFF1431 at 55.774 kb on + strand, within GFF1431 at 55.774 kb on + strand, within GFF1431 at 55.774 kb on + strand, within GFF1431 at 55.774 kb on + strand, within GFF1431 at 55.775 kb on - strand, within GFF1431 at 55.775 kb on - strand, within GFF1431 at 55.880 kb on + strand, within GFF1431 at 55.880 kb on + strand, within GFF1431 at 55.880 kb on + strand, within GFF1431 at 55.880 kb on + strand, within GFF1431 at 55.881 kb on - strand, within GFF1431 at 55.881 kb on - strand, within GFF1431 at 55.881 kb on - strand, within GFF1431 at 55.881 kb on - strand, within GFF1431 at 55.881 kb on - strand, within GFF1431 at 55.885 kb on - strand, within GFF1431
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 51,521 - GFF1428 0.56 +0.4 51,521 - GFF1428 0.56 -0.8 51,569 + GFF1428 0.64 -0.5 51,569 + GFF1428 0.64 -0.0 51,570 - GFF1428 0.64 +0.0 51,629 + GFF1428 0.73 -0.6 51,630 - GFF1428 0.73 +1.0 51,630 - GFF1428 0.73 -1.4 51,630 - GFF1428 0.73 -0.3 51,630 - GFF1428 0.73 +0.9 51,648 - GFF1428 0.76 +0.2 51,940 + GFF1429 0.20 -0.2 51,940 + GFF1429 0.20 -0.3 51,941 - GFF1429 0.20 +0.5 51,955 + GFF1429 0.22 +0.5 51,955 + GFF1429 0.22 -0.3 51,955 + GFF1429 0.22 +0.1 51,955 + GFF1429 0.22 -0.1 51,964 + GFF1429 0.23 -0.2 51,965 - GFF1429 0.23 +0.0 52,224 + GFF1429 0.61 -0.1 52,740 + -0.2 52,740 + +0.4 52,740 + -0.9 52,741 - +0.5 52,741 - -0.4 52,741 - +0.4 52,741 - +0.7 52,741 - -0.3 53,037 + GFF1430 0.22 +0.9 53,037 + GFF1430 0.22 +0.0 53,037 + GFF1430 0.22 -1.5 53,037 + GFF1430 0.22 +0.3 53,038 - GFF1430 0.22 +0.6 53,061 + GFF1430 0.23 +0.1 53,328 + GFF1430 0.34 +0.3 53,328 + GFF1430 0.34 +0.5 53,328 + GFF1430 0.34 -0.4 53,328 + GFF1430 0.34 -0.3 53,493 + GFF1430 0.41 -0.3 53,493 + GFF1430 0.41 +0.1 53,613 + GFF1430 0.45 -0.3 53,613 + GFF1430 0.45 +0.6 53,614 - GFF1430 0.46 +0.2 53,614 - GFF1430 0.46 -0.9 53,614 - GFF1430 0.46 -0.3 53,614 - GFF1430 0.46 -0.2 53,658 + GFF1430 0.47 +0.1 53,928 + GFF1430 0.59 +0.3 54,012 + GFF1430 0.62 -0.5 54,013 - GFF1430 0.62 +0.4 54,063 + GFF1430 0.64 -0.2 54,063 + GFF1430 0.64 -0.5 54,063 + GFF1430 0.64 +0.8 54,064 - GFF1430 0.64 +0.7 54,238 - GFF1430 0.71 +0.0 54,238 - GFF1430 0.71 -0.3 54,238 - GFF1430 0.71 +0.4 54,238 - GFF1430 0.71 +0.2 54,238 - GFF1430 0.71 -0.3 54,238 - GFF1430 0.71 +1.2 54,319 - GFF1430 0.75 -0.6 54,417 + GFF1430 0.79 +0.7 54,418 - GFF1430 0.79 -1.4 54,467 - GFF1430 0.81 -0.1 54,477 + GFF1430 0.81 -0.5 54,477 + GFF1430 0.81 +0.1 54,477 + GFF1430 0.81 -0.4 54,477 + GFF1430 0.81 +0.0 54,477 + GFF1430 0.81 +0.2 54,478 - GFF1430 0.81 -0.5 54,478 - GFF1430 0.81 +0.0 54,478 - GFF1430 0.81 -0.6 54,478 - GFF1430 0.81 +0.1 54,478 - GFF1430 0.81 -0.7 54,522 + GFF1430 0.83 +0.6 54,528 + GFF1430 0.83 -0.3 54,528 + GFF1430 0.83 +0.2 54,722 - -0.6 54,826 + -1.0 54,872 + +0.3 54,873 - +0.4 54,951 + +0.3 54,952 - -0.1 55,002 + +1.4 55,022 - -0.2 55,022 - +0.2 55,044 + -0.0 55,140 - -0.6 55,349 + GFF1431 0.18 +0.2 55,349 + GFF1431 0.18 -0.4 55,350 - GFF1431 0.18 +0.3 55,350 - GFF1431 0.18 +0.3 55,526 + GFF1431 0.38 +1.8 55,677 + GFF1431 0.54 -1.0 55,679 + GFF1431 0.55 -0.2 55,680 - GFF1431 0.55 +0.0 55,680 - GFF1431 0.55 +0.3 55,774 + GFF1431 0.65 -0.0 55,774 + GFF1431 0.65 -0.7 55,774 + GFF1431 0.65 -0.2 55,774 + GFF1431 0.65 +1.2 55,774 + GFF1431 0.65 -0.2 55,775 - GFF1431 0.65 -0.6 55,775 - GFF1431 0.65 +0.5 55,880 + GFF1431 0.77 +0.4 55,880 + GFF1431 0.77 +0.1 55,880 + GFF1431 0.77 -0.6 55,880 + GFF1431 0.77 -0.7 55,881 - GFF1431 0.77 -1.3 55,881 - GFF1431 0.77 -0.8 55,881 - GFF1431 0.77 -0.4 55,881 - GFF1431 0.77 +0.5 55,881 - GFF1431 0.77 -0.2 55,885 - GFF1431 0.78 -0.5
Or see this region's nucleotide sequence