Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1283 and GFF1284 are separated by 100 nucleotides GFF1284 and GFF1285 are separated by 45 nucleotides GFF1285 and GFF1286 are separated by 43 nucleotides
GFF1283 - hypothetical protein, at 1,391,429 to 1,392,445
GFF1283
GFF1284 - putative oxidoreductase, at 1,392,546 to 1,393,313
GFF1284
GFF1285 - Acetyl-CoA acetyltransferase, at 1,393,359 to 1,394,549
GFF1285
GFF1286 - Acyl-CoA dehydrogenase, at 1,394,593 to 1,395,720
GFF1286
Position (kb) 1393
1394
1395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1392.452 kb on - strand at 1392.659 kb on + strand, within GFF1284 at 1392.659 kb on + strand, within GFF1284 at 1392.868 kb on + strand, within GFF1284 at 1392.869 kb on - strand, within GFF1284 at 1392.869 kb on - strand, within GFF1284 at 1392.869 kb on - strand, within GFF1284 at 1392.900 kb on + strand, within GFF1284 at 1393.026 kb on + strand, within GFF1284 at 1393.026 kb on + strand, within GFF1284 at 1393.107 kb on - strand, within GFF1284 at 1393.320 kb on - strand at 1393.734 kb on + strand, within GFF1285 at 1393.734 kb on + strand, within GFF1285 at 1393.735 kb on - strand, within GFF1285 at 1393.822 kb on - strand, within GFF1285 at 1393.872 kb on + strand, within GFF1285 at 1393.872 kb on + strand, within GFF1285 at 1393.873 kb on - strand, within GFF1285 at 1394.009 kb on - strand, within GFF1285 at 1394.469 kb on + strand at 1394.565 kb on - strand at 1394.566 kb on + strand at 1394.566 kb on + strand at 1394.566 kb on + strand at 1394.567 kb on - strand at 1394.567 kb on - strand at 1394.567 kb on - strand at 1394.567 kb on - strand at 1394.791 kb on + strand, within GFF1286 at 1394.791 kb on + strand, within GFF1286 at 1394.791 kb on + strand, within GFF1286 at 1394.792 kb on - strand, within GFF1286 at 1395.028 kb on + strand, within GFF1286 at 1395.028 kb on + strand, within GFF1286 at 1395.028 kb on + strand, within GFF1286 at 1395.028 kb on + strand, within GFF1286 at 1395.028 kb on + strand, within GFF1286 at 1395.029 kb on - strand, within GFF1286 at 1395.029 kb on - strand, within GFF1286 at 1395.029 kb on - strand, within GFF1286 at 1395.029 kb on - strand, within GFF1286 at 1395.029 kb on - strand, within GFF1286 at 1395.029 kb on - strand, within GFF1286 at 1395.029 kb on - strand, within GFF1286 at 1395.029 kb on - strand, within GFF1286 at 1395.164 kb on - strand, within GFF1286 at 1395.376 kb on + strand, within GFF1286 at 1395.376 kb on + strand, within GFF1286 at 1395.377 kb on - strand, within GFF1286
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 1,392,452 - +2.1 1,392,659 + GFF1284 0.15 +0.1 1,392,659 + GFF1284 0.15 -0.3 1,392,868 + GFF1284 0.42 -2.9 1,392,869 - GFF1284 0.42 +0.7 1,392,869 - GFF1284 0.42 +0.2 1,392,869 - GFF1284 0.42 +0.1 1,392,900 + GFF1284 0.46 -0.4 1,393,026 + GFF1284 0.62 -0.5 1,393,026 + GFF1284 0.62 +0.3 1,393,107 - GFF1284 0.73 +0.2 1,393,320 - +0.5 1,393,734 + GFF1285 0.31 -0.1 1,393,734 + GFF1285 0.31 -0.5 1,393,735 - GFF1285 0.32 -0.9 1,393,822 - GFF1285 0.39 -0.9 1,393,872 + GFF1285 0.43 -0.3 1,393,872 + GFF1285 0.43 +0.3 1,393,873 - GFF1285 0.43 -1.2 1,394,009 - GFF1285 0.55 -0.2 1,394,469 + -0.4 1,394,565 - -0.0 1,394,566 + +0.4 1,394,566 + -0.1 1,394,566 + +0.3 1,394,567 - -0.2 1,394,567 - +0.2 1,394,567 - +1.5 1,394,567 - +0.6 1,394,791 + GFF1286 0.18 +0.3 1,394,791 + GFF1286 0.18 +0.5 1,394,791 + GFF1286 0.18 +0.8 1,394,792 - GFF1286 0.18 +0.6 1,395,028 + GFF1286 0.39 +0.6 1,395,028 + GFF1286 0.39 -0.1 1,395,028 + GFF1286 0.39 -0.0 1,395,028 + GFF1286 0.39 +0.9 1,395,028 + GFF1286 0.39 -0.4 1,395,029 - GFF1286 0.39 -0.5 1,395,029 - GFF1286 0.39 -0.3 1,395,029 - GFF1286 0.39 +1.6 1,395,029 - GFF1286 0.39 +0.2 1,395,029 - GFF1286 0.39 -0.7 1,395,029 - GFF1286 0.39 +0.1 1,395,029 - GFF1286 0.39 +0.6 1,395,029 - GFF1286 0.39 -0.2 1,395,164 - GFF1286 0.51 +0.4 1,395,376 + GFF1286 0.69 +0.1 1,395,376 + GFF1286 0.69 +0.0 1,395,377 - GFF1286 0.70 +0.5
Or see this region's nucleotide sequence