Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF114 and GFF115 overlap by 1 nucleotides GFF115 and GFF116 are separated by 145 nucleotides GFF116 and GFF117 are separated by 21 nucleotides GFF117 and GFF118 are separated by 466 nucleotides
GFF114 - Sugar fermentation stimulation protein A, at 124,294 to 125,007
GFF114
GFF115 - hypothetical protein, at 125,007 to 125,573
GFF115
GFF116 - Multidrug transporter EmrE, at 125,719 to 126,063
GFF116
GFF117 - hypothetical protein, at 126,085 to 126,504
GFF117
GFF118 - 50S ribosomal protein L9, at 126,971 to 127,552
GFF118
Position (kb) 125
126
127 Strain fitness (log2 ratio) -1
0
1
2 at 125.134 kb on + strand, within GFF115 at 125.134 kb on + strand, within GFF115 at 125.134 kb on + strand, within GFF115 at 125.134 kb on + strand, within GFF115 at 125.134 kb on + strand, within GFF115 at 125.135 kb on - strand, within GFF115 at 125.135 kb on - strand, within GFF115 at 125.135 kb on - strand, within GFF115 at 125.236 kb on + strand, within GFF115 at 125.237 kb on - strand, within GFF115 at 125.336 kb on - strand, within GFF115 at 125.366 kb on - strand, within GFF115 at 125.542 kb on + strand at 125.596 kb on - strand at 125.740 kb on + strand at 125.740 kb on + strand at 125.740 kb on + strand at 125.741 kb on - strand at 125.741 kb on - strand at 125.747 kb on - strand at 125.747 kb on - strand at 125.782 kb on - strand, within GFF116 at 125.909 kb on - strand, within GFF116 at 125.909 kb on - strand, within GFF116 at 125.962 kb on + strand, within GFF116 at 125.963 kb on - strand, within GFF116 at 126.073 kb on + strand at 126.074 kb on - strand at 126.074 kb on - strand at 126.086 kb on + strand at 126.087 kb on - strand at 126.087 kb on - strand at 126.087 kb on - strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.089 kb on - strand at 126.512 kb on - strand at 126.576 kb on + strand at 126.576 kb on + strand at 126.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 125,134 + GFF115 0.22 -0.8 125,134 + GFF115 0.22 +0.9 125,134 + GFF115 0.22 -0.3 125,134 + GFF115 0.22 -0.2 125,134 + GFF115 0.22 -0.8 125,135 - GFF115 0.23 +0.5 125,135 - GFF115 0.23 +0.0 125,135 - GFF115 0.23 -1.0 125,236 + GFF115 0.40 -0.5 125,237 - GFF115 0.41 -0.0 125,336 - GFF115 0.58 +0.3 125,366 - GFF115 0.63 -0.3 125,542 + -0.3 125,596 - -0.5 125,740 + +0.1 125,740 + -0.1 125,740 + -0.3 125,741 - +0.2 125,741 - +0.4 125,747 - -0.2 125,747 - -0.6 125,782 - GFF116 0.18 -0.8 125,909 - GFF116 0.55 -0.7 125,909 - GFF116 0.55 +0.0 125,962 + GFF116 0.70 +1.1 125,963 - GFF116 0.71 +0.4 126,073 + +0.4 126,074 - -0.8 126,074 - +0.7 126,086 + -0.7 126,087 - +2.1 126,087 - -0.5 126,087 - -0.3 126,088 + -0.3 126,088 + +0.1 126,088 + -0.1 126,089 - -0.1 126,512 - +0.9 126,576 + -0.8 126,576 + -0.5 126,577 - -0.2
Or see this region's nucleotide sequence