Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF105 and GFF106 are separated by 141 nucleotides GFF106 and GFF107 are separated by 9 nucleotides GFF107 and GFF108 are separated by 16 nucleotides GFF108 and GFF109 are separated by 94 nucleotides GFF109 and GFF110 are separated by 5 nucleotides
GFF105 - Silver exporting P-type ATPase, at 114,948 to 117,497
GFF105
GFF106 - Copper-sensing transcriptional repressor CsoR, at 117,639 to 117,914
GFF106
GFF107 - Ribosomal RNA small subunit methyltransferase D, at 117,924 to 118,475
GFF107
GFF108 - hypothetical protein, at 118,492 to 120,372
GFF108
GFF109 - tRNA-specific adenosine deaminase, at 120,467 to 120,895
GFF109
GFF110 - Fluoroacetate dehalogenase, at 120,901 to 121,812
GFF110
Position (kb) 118
119
120
121 Strain fitness (log2 ratio) -2
-1
0
1 at 117.528 kb on - strand at 117.613 kb on + strand at 117.629 kb on - strand at 117.732 kb on + strand, within GFF106 at 117.874 kb on + strand, within GFF106 at 117.875 kb on - strand, within GFF106 at 118.161 kb on - strand, within GFF107 at 118.360 kb on - strand, within GFF107 at 118.373 kb on + strand, within GFF107 at 118.500 kb on + strand at 118.715 kb on + strand, within GFF108 at 119.502 kb on - strand, within GFF108 at 119.752 kb on + strand, within GFF108 at 119.752 kb on + strand, within GFF108 at 120.140 kb on - strand, within GFF108 at 120.140 kb on - strand, within GFF108 at 120.894 kb on - strand at 120.903 kb on - strand at 120.903 kb on - strand at 121.352 kb on + strand, within GFF110 at 121.352 kb on + strand, within GFF110
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 117,528 - -0.2 117,613 + +0.3 117,629 - -0.9 117,732 + GFF106 0.34 +0.2 117,874 + GFF106 0.85 -1.4 117,875 - GFF106 0.86 +0.3 118,161 - GFF107 0.43 -0.4 118,360 - GFF107 0.79 -0.2 118,373 + GFF107 0.81 -1.5 118,500 + +0.5 118,715 + GFF108 0.12 +0.0 119,502 - GFF108 0.54 -1.0 119,752 + GFF108 0.67 -1.9 119,752 + GFF108 0.67 -0.2 120,140 - GFF108 0.88 -0.1 120,140 - GFF108 0.88 +0.3 120,894 - -0.5 120,903 - +0.2 120,903 - -0.0 121,352 + GFF110 0.49 -1.8 121,352 + GFF110 0.49 -0.5
Or see this region's nucleotide sequence