Strain Fitness in Xanthobacter sp. DMC5 around GFF1019

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1018 and GFF1019 are separated by 179 nucleotidesGFF1019 and GFF1020 are separated by 126 nucleotides GFF1018 - Cystathionine beta-lyase MetC, at 1,099,838 to 1,101,052 GFF1018 GFF1019 - Putative amino-acid ABC transporter-binding protein YhdW, at 1,101,232 to 1,102,242 GFF1019 GFF1020 - hypothetical protein, at 1,102,369 to 1,103,664 GFF1020 Position (kb) 1101 1102 1103Strain fitness (log2 ratio) -1 0 1at 1100.319 kb on + strand, within GFF1018at 1100.320 kb on - strand, within GFF1018at 1100.320 kb on - strand, within GFF1018at 1100.398 kb on - strand, within GFF1018at 1100.398 kb on - strand, within GFF1018at 1100.398 kb on - strand, within GFF1018at 1100.422 kb on + strand, within GFF1018at 1100.422 kb on + strand, within GFF1018at 1100.422 kb on + strand, within GFF1018at 1100.423 kb on - strand, within GFF1018at 1100.570 kb on + strand, within GFF1018at 1100.628 kb on + strand, within GFF1018at 1100.628 kb on + strand, within GFF1018at 1100.629 kb on - strand, within GFF1018at 1100.629 kb on - strand, within GFF1018at 1100.631 kb on + strand, within GFF1018at 1100.631 kb on + strand, within GFF1018at 1100.632 kb on - strand, within GFF1018at 1100.632 kb on - strand, within GFF1018at 1100.632 kb on - strand, within GFF1018at 1100.692 kb on - strand, within GFF1018at 1100.856 kb on + strand, within GFF1018at 1100.856 kb on + strand, within GFF1018at 1100.856 kb on + strand, within GFF1018at 1100.856 kb on + strand, within GFF1018at 1100.857 kb on - strand, within GFF1018at 1100.857 kb on - strand, within GFF1018at 1100.857 kb on - strand, within GFF1018at 1100.857 kb on - strand, within GFF1018at 1100.862 kb on + strand, within GFF1018at 1100.892 kb on + strand, within GFF1018at 1100.893 kb on - strand, within GFF1018at 1101.586 kb on + strand, within GFF1019at 1101.586 kb on + strand, within GFF1019at 1101.590 kb on - strand, within GFF1019at 1101.706 kb on + strand, within GFF1019at 1101.885 kb on - strand, within GFF1019at 1101.956 kb on - strand, within GFF1019at 1102.066 kb on + strand, within GFF1019at 1102.067 kb on - strand, within GFF1019at 1102.129 kb on + strand, within GFF1019at 1102.501 kb on + strand, within GFF1020at 1102.762 kb on + strand, within GFF1020at 1102.763 kb on - strand, within GFF1020at 1102.945 kb on + strand, within GFF1020at 1103.041 kb on + strand, within GFF1020at 1103.042 kb on - strand, within GFF1020

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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1,100,319 + GFF1018 0.40 -1.0
1,100,320 - GFF1018 0.40 +1.0
1,100,320 - GFF1018 0.40 -0.1
1,100,398 - GFF1018 0.46 +0.5
1,100,398 - GFF1018 0.46 +0.6
1,100,398 - GFF1018 0.46 -0.2
1,100,422 + GFF1018 0.48 +0.3
1,100,422 + GFF1018 0.48 -0.1
1,100,422 + GFF1018 0.48 -0.1
1,100,423 - GFF1018 0.48 +0.4
1,100,570 + GFF1018 0.60 -0.8
1,100,628 + GFF1018 0.65 +0.1
1,100,628 + GFF1018 0.65 -0.2
1,100,629 - GFF1018 0.65 -0.5
1,100,629 - GFF1018 0.65 +0.9
1,100,631 + GFF1018 0.65 +0.5
1,100,631 + GFF1018 0.65 -0.6
1,100,632 - GFF1018 0.65 +0.2
1,100,632 - GFF1018 0.65 -0.0
1,100,632 - GFF1018 0.65 -0.0
1,100,692 - GFF1018 0.70 +0.5
1,100,856 + GFF1018 0.84 +0.5
1,100,856 + GFF1018 0.84 +1.7
1,100,856 + GFF1018 0.84 +0.0
1,100,856 + GFF1018 0.84 +0.6
1,100,857 - GFF1018 0.84 +0.1
1,100,857 - GFF1018 0.84 -0.1
1,100,857 - GFF1018 0.84 +0.4
1,100,857 - GFF1018 0.84 +0.0
1,100,862 + GFF1018 0.84 +0.6
1,100,892 + GFF1018 0.87 +0.2
1,100,893 - GFF1018 0.87 -0.0
1,101,586 + GFF1019 0.35 +0.6
1,101,586 + GFF1019 0.35 -0.6
1,101,590 - GFF1019 0.35 -1.6
1,101,706 + GFF1019 0.47 -0.4
1,101,885 - GFF1019 0.65 -1.6
1,101,956 - GFF1019 0.72 +0.7
1,102,066 + GFF1019 0.82 -1.3
1,102,067 - GFF1019 0.83 -0.3
1,102,129 + GFF1019 0.89 -1.1
1,102,501 + GFF1020 0.10 +0.0
1,102,762 + GFF1020 0.30 +1.0
1,102,763 - GFF1020 0.30 +0.8
1,102,945 + GFF1020 0.44 +1.6
1,103,041 + GFF1020 0.52 +1.4
1,103,042 - GFF1020 0.52 -0.8

Or see this region's nucleotide sequence