Experiment: Erythromycin stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20865 and ABZR88_RS20870 are separated by 116 nucleotides ABZR88_RS20870 and ABZR88_RS20875 overlap by 4 nucleotides ABZR88_RS20875 and ABZR88_RS20880 are separated by 39 nucleotides ABZR88_RS20880 and ABZR88_RS20885 are separated by 134 nucleotides
ABZR88_RS20865: ABZR88_RS20865 - DNA helicase RecQ, at 5,046,604 to 5,048,769
_RS20865
ABZR88_RS20870: ABZR88_RS20870 - addiction module protein, at 5,048,886 to 5,049,128
_RS20870
ABZR88_RS20875: ABZR88_RS20875 - type II toxin-antitoxin system RelE/ParE family toxin, at 5,049,125 to 5,049,430
_RS20875
ABZR88_RS20880: ABZR88_RS20880 - hypothetical protein, at 5,049,470 to 5,050,021
_RS20880
ABZR88_RS20885: ABZR88_RS20885 - ferrochelatase, at 5,050,156 to 5,051,175
_RS20885
Position (kb) 5049
5050 Strain fitness (log2 ratio) -1
0
1 at 5048.372 kb on - strand, within ABZR88_RS20865 at 5048.542 kb on + strand, within ABZR88_RS20865 at 5048.587 kb on - strand at 5048.635 kb on - strand at 5048.679 kb on + strand at 5049.139 kb on + strand at 5049.188 kb on - strand, within ABZR88_RS20875 at 5049.194 kb on + strand, within ABZR88_RS20875 at 5049.195 kb on - strand, within ABZR88_RS20875 at 5049.275 kb on + strand, within ABZR88_RS20875 at 5049.373 kb on + strand, within ABZR88_RS20875 at 5049.374 kb on - strand, within ABZR88_RS20875 at 5049.377 kb on - strand, within ABZR88_RS20875 at 5049.514 kb on - strand at 5049.524 kb on - strand at 5049.658 kb on + strand, within ABZR88_RS20880 at 5049.672 kb on + strand, within ABZR88_RS20880 at 5049.826 kb on + strand, within ABZR88_RS20880 at 5049.835 kb on - strand, within ABZR88_RS20880 at 5049.844 kb on + strand, within ABZR88_RS20880
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin stress 0.05 mg/ml remove 5,048,372 - ABZR88_RS20865 0.82 -0.4 5,048,542 + ABZR88_RS20865 0.89 +0.1 5,048,587 - -0.3 5,048,635 - +0.0 5,048,679 + +0.1 5,049,139 + +0.0 5,049,188 - ABZR88_RS20875 0.21 -0.0 5,049,194 + ABZR88_RS20875 0.23 +0.6 5,049,195 - ABZR88_RS20875 0.23 +0.9 5,049,275 + ABZR88_RS20875 0.49 +0.1 5,049,373 + ABZR88_RS20875 0.81 -0.3 5,049,374 - ABZR88_RS20875 0.81 +0.1 5,049,377 - ABZR88_RS20875 0.82 -1.4 5,049,514 - -0.2 5,049,524 - +0.2 5,049,658 + ABZR88_RS20880 0.34 +0.4 5,049,672 + ABZR88_RS20880 0.37 +0.4 5,049,826 + ABZR88_RS20880 0.64 -0.3 5,049,835 - ABZR88_RS20880 0.66 -0.1 5,049,844 + ABZR88_RS20880 0.68 +0.4
Or see this region's nucleotide sequence