Experiment: Erythromycin stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11675 and ABZR88_RS11680 are separated by 111 nucleotides ABZR88_RS11680 and ABZR88_RS11685 are separated by 110 nucleotides ABZR88_RS11685 and ABZR88_RS11690 are separated by 59 nucleotides ABZR88_RS11690 and ABZR88_RS11695 are separated by 147 nucleotides
ABZR88_RS11675: ABZR88_RS11675 - alpha/beta fold hydrolase, at 2,873,542 to 2,874,822
_RS11675
ABZR88_RS11680: ABZR88_RS11680 - DinB family protein, at 2,874,934 to 2,875,404
_RS11680
ABZR88_RS11685: ABZR88_RS11685 - DUF885 domain-containing protein, at 2,875,515 to 2,877,287
_RS11685
ABZR88_RS11690: ABZR88_RS11690 - YXWGXW repeat-containing protein, at 2,877,347 to 2,877,649
_RS11690
ABZR88_RS11695: ABZR88_RS11695 - SGNH/GDSL hydrolase family protein, at 2,877,797 to 2,878,870
_RS11695
Position (kb)
2875
2876
2877
2878 Strain fitness (log2 ratio)
-1
0
1 at 2875.126 kb on - strand, within ABZR88_RS11680 at 2875.126 kb on - strand, within ABZR88_RS11680 at 2875.224 kb on + strand, within ABZR88_RS11680 at 2875.245 kb on + strand, within ABZR88_RS11680 at 2875.488 kb on + strand at 2875.500 kb on + strand at 2875.528 kb on + strand at 2875.529 kb on - strand at 2875.610 kb on + strand at 2875.610 kb on + strand at 2875.699 kb on - strand, within ABZR88_RS11685 at 2875.884 kb on + strand, within ABZR88_RS11685 at 2875.932 kb on - strand, within ABZR88_RS11685 at 2876.013 kb on - strand, within ABZR88_RS11685 at 2876.268 kb on + strand, within ABZR88_RS11685 at 2876.283 kb on - strand, within ABZR88_RS11685 at 2876.353 kb on + strand, within ABZR88_RS11685 at 2876.370 kb on - strand, within ABZR88_RS11685 at 2876.375 kb on + strand, within ABZR88_RS11685 at 2876.452 kb on + strand, within ABZR88_RS11685 at 2876.453 kb on - strand, within ABZR88_RS11685 at 2876.601 kb on + strand, within ABZR88_RS11685 at 2876.784 kb on + strand, within ABZR88_RS11685 at 2876.786 kb on + strand, within ABZR88_RS11685 at 2876.787 kb on - strand, within ABZR88_RS11685 at 2876.972 kb on - strand, within ABZR88_RS11685 at 2877.248 kb on + strand at 2877.345 kb on + strand at 2877.346 kb on - strand at 2877.456 kb on + strand, within ABZR88_RS11690 at 2877.457 kb on - strand, within ABZR88_RS11690 at 2877.559 kb on + strand, within ABZR88_RS11690 at 2877.670 kb on - strand at 2877.672 kb on - strand at 2877.791 kb on - strand at 2877.888 kb on - strand at 2877.888 kb on - strand at 2877.955 kb on + strand, within ABZR88_RS11695 at 2878.022 kb on - strand, within ABZR88_RS11695 at 2878.252 kb on + strand, within ABZR88_RS11695 at 2878.273 kb on - strand, within ABZR88_RS11695
Per-strain Table
Position Strand Gene LocusTag Fraction Erythromycin stress 0.05 mg/ml remove 2,875,126 - ABZR88_RS11680 0.41 -0.0 2,875,126 - ABZR88_RS11680 0.41 +1.1 2,875,224 + ABZR88_RS11680 0.62 -0.3 2,875,245 + ABZR88_RS11680 0.66 -1.0 2,875,488 + -0.9 2,875,500 + -0.2 2,875,528 + +0.4 2,875,529 - +0.4 2,875,610 + -1.1 2,875,610 + -1.2 2,875,699 - ABZR88_RS11685 0.10 +0.3 2,875,884 + ABZR88_RS11685 0.21 -0.0 2,875,932 - ABZR88_RS11685 0.24 -0.1 2,876,013 - ABZR88_RS11685 0.28 +0.1 2,876,268 + ABZR88_RS11685 0.42 -0.2 2,876,283 - ABZR88_RS11685 0.43 +0.0 2,876,353 + ABZR88_RS11685 0.47 +0.1 2,876,370 - ABZR88_RS11685 0.48 +0.3 2,876,375 + ABZR88_RS11685 0.49 -0.0 2,876,452 + ABZR88_RS11685 0.53 -0.1 2,876,453 - ABZR88_RS11685 0.53 +0.3 2,876,601 + ABZR88_RS11685 0.61 +0.1 2,876,784 + ABZR88_RS11685 0.72 -0.5 2,876,786 + ABZR88_RS11685 0.72 +0.1 2,876,787 - ABZR88_RS11685 0.72 +0.4 2,876,972 - ABZR88_RS11685 0.82 +0.2 2,877,248 + -0.2 2,877,345 + +0.6 2,877,346 - +0.2 2,877,456 + ABZR88_RS11690 0.36 -0.4 2,877,457 - ABZR88_RS11690 0.36 -0.3 2,877,559 + ABZR88_RS11690 0.70 -0.1 2,877,670 - -0.0 2,877,672 - -0.3 2,877,791 - -0.0 2,877,888 - -0.2 2,877,888 - +0.8 2,877,955 + ABZR88_RS11695 0.15 -0.2 2,878,022 - ABZR88_RS11695 0.21 -0.2 2,878,252 + ABZR88_RS11695 0.42 -0.0 2,878,273 - ABZR88_RS11695 0.44 +0.1
Or see this region's nucleotide sequence